Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tremella_20fuciformis_20[genbank_20GCA_5F000987905.1_202015-05-04] 3,502 sequences; 23,635,607 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1820 95.1 1e-14 >seq1820 Length=19797 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||||| || | |||| || || ||||| || |||||||| || | Sbjct 820 CCACCACGGAGACGCAGGACGAGGTGAAGAGTCGACTCTTTCTGAATGTTGTAGTCCGAC 761 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | || || || || || || ||| |||| |||||||||||||| || || Sbjct 760 AGAGTTCGTCCA-TCCTCAAGCTGCTTCCCGGCAAAGATGAGACGTTGCTGATCAGGGGG 702 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||| |||||||| || || ||||| | || | ||||| | | ||| || Sbjct 701 GATGCCCTCTTTGTCCTGGATCTTCGCTTTTACGTTGTCGATTGTGTCGGACGATTCAAC 642 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||| | ||| | ||||| ||||| | ||||| ||||| || |||||| Sbjct 641 TTCGAGAGTGATTGTCTTCCCGGTGAGAGTTTTGACGAAAATCTGCATA 593 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || |||||||| |||||||||||| | ||| | ||| |||||||| || ||| Sbjct 334 GTGGACTCTTTTTGGATGTTGTAATCGGAAAGTGTACGGCCGTCCTCGAGTTGCTTGCCA 275 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| ||||||||||| || || || ||||| || ||||| || || || Sbjct 274 GCGAAGATGAGACGTTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 215 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| ||| || ||||| | || | ||||||||| || | || Sbjct 214 ACATTGTCGATGGTGTCGCTGGACTCGACTTCGAGGGTGATCGTCTTGCCAGTAAGGGTC 155 Query 143168 TTTACGAATATTTGCATA 143185 || ||||| || |||||| Sbjct 154 TTCACGAAGATCTGCATA 137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506992205444640