Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tremella_20fuciformis_20[genbank_20GCA_5F000987905.1_202015-05-04] 3,502 sequences; 23,635,607 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3392 138 2e-27 seq1542 138 2e-27 >seq3392 Length=91092 Score = 138 bits (152), Expect = 2e-27 Identities = 350/528 (66%), Gaps = 21/528 (4%) Strand=Plus/Minus Query 125331 CTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGG 125390 ||||| | || |||||||| | |||| ||| || ||||| | |||| | | Sbjct 44728 CTCTTCGAGGCCATCGACACCATCCCGTGTATCAAGAAGAAGGCCGAGTGGGCTCTCAAG 44669 Query 125391 TGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAG 125450 |||||| ||| | || | | |||||| | || | || ||||| ||||| ||| Sbjct 44668 TGGATCACGGACACCCGATCCACCTTCGCCGAGCGCCTCATCGCTTTCGCTGCCGTCGAG 44609 Query 125451 GGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATG 125510 ||||||||||| || || || ||| ||||||| ||||| ||||||||||| |||||| Sbjct 44608 GGCATCTTCTTCTCCGGCTCGTTCGCGTCCATCTTCTGGCTGAAGAAGCGCGGCCTCATG 44549 Query 125511 CCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTT 125570 ||||| || || | |||||| | || || || |||||||| || ||| |||||| Sbjct 44548 CCCGGTCTTACCTTCTCCAACGAGCTCATCTCGCGTGACGAGGGTCTTCACACCGACTTT 44489 Query 125571 GCCATTCTACTGTTTCGCAACTATCTGCGTC-CCGAGTGCAGATCCAG--CGATGAAAAG 125627 || || || || || | | || || | ||| || | || || |||||| Sbjct 44488 GCTTGCCTGCTCTT---CACCCACCTCCGCCGCCGCCCTCATCCCGAGACCGTCGAAAAG 44432 Query 125628 GTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTA 125687 ||||| ||| ||||| | ||| || || ||||| || || || |||| Sbjct 44431 ATCATC---------CGCGAGGCCGTCAAGATCGAGCAGGAGTTCCTTACTGACGCCCTG 44381 Query 125688 CCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCA 125747 || ||| | || |||||||||| || || |||||| ||||||| ||||| || || Sbjct 44380 CCCGTCTCGCTCATCGGCATGAACTCGAAACTCATGTGCCAGTACATCGAGTTCGTCGCC 44321 Query 125748 GATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTACAACGCCAAGAATCCCTTT 125804 || || || || || | ||| || ||| | | |||| || || ||||| Sbjct 44320 GACCGCCTGCT---CGTCGCTCTCGGCAACGAGAAGGTCTGGAACGTCAGCAACCCCTTC 44264 Query 125805 GATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAG 125852 || |||||| | || || || |||| ||| ||||||| |||||| Sbjct 44263 GACTTCATGGAGATGATCTCTCTCCAGGGCAAGGCCAACTTCTTCGAG 44216 >seq1542 Length=14377 Score = 138 bits (152), Expect = 2e-27 Identities = 378/571 (66%), Gaps = 16/571 (3%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || |||||| || ||| || | || || |||||| | ||| |||| | | ||| Sbjct 6561 ACCAACGGCTACTCCAACGGTATCGTCCCTATGCTCCGTGCTTACGATGCTACTGCTCGA 6620 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 ||||| ||||| ||||| || || || || ||| | ||| ||||| | || |||||| Sbjct 6621 TACGTGGACCAGGGTGGCAACAAGCGACCCGGTGCTTTCGCCATCTACCTCGAGCCTTGG 6680 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA--- 96983 ||||| ||| | || ||||| |||| |||| || ||| || | |||||| | Sbjct 6681 CACGCAGACATCTTCGACTTCCTCGACCTGCGAAAGAACCACGG---TAAAGAGGAAGTC 6737 Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043 || || | || | || || ||||| ||| | | || | ||||||||||||||| | Sbjct 6738 CGCGCTCGTGATCTCTTCTACGCACTTTGGATCTCCGACCTCTTCATGAAGCGCGTCGAG 6797 Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103 || |||| |||||| || |||||||||| | || ||||| ||| | || ||| Sbjct 6798 TCCGATGGCGACTGGACTCTGATGTGCCCCGCCGAGTGCCCCGGCCTGGCTGACTGCCAC 6857 Query 97104 GGCGAAGAGTTTGAGGCCAAG---TACACGGCCTACGAGCAAGAGGGC-CGATACGTGAG 97159 || || || ||| ||| ||| || ||||||| | | ||| | || || Sbjct 6858 TCGGATGACTTCGAG---AAGCTCTACGAGGGCTACGAGAAGGCCGGCAAGGGTCGCAAG 6914 Query 97160 ACGAGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAA 97218 || | || | || | |||| || ||| |||||| | ||| ||| ||||| || Sbjct 6915 ACCA-TCAAGGCTC-AGAAGCTCTGGTTCGCCATCCTCGAGGCCCAGACCGAGACCGGTG 6972 Query 97219 CTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCA 97278 || | ||| || |||||||| ||| || ||||| |||||| | ||| | |||| Sbjct 6973 GACCTTTCATGCTGTACAAGGACGCCGCCAACCGCAAGTCCAACCAGCAGCACCTCGGCA 7032 Query 97279 CCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGG 97338 | |||||| ||||| || ||||| || || | |||||| | |||| || || | Sbjct 7033 CAATCAAGTCGTCCAACCTCTGCACTGAGATCATCGAGTACTCTGCTCCCGATGAAGTCG 7092 Query 97339 CAGTTTGCGTTCTGGCATCGGTCAATCTGCC 97369 | |||||| || || ||| || ||||| Sbjct 7093 CCGTTTGCAACCTCGCCTCGCTCGCCCTGCC 7123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741026760133520