Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tremella_20fuciformis_20[genbank_20GCA_5F000987905.1_202015-05-04] 3,502 sequences; 23,635,607 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1820 131 2e-25 seq3392 114 1e-20 >seq1820 Length=19797 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| ||||| | || | ||| ||||| ||||| |||||||||||| Sbjct 364 CCACCGCGGAGACGGAGCACAAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAATCGGAA 305 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| || |||||||| ||| |||| | ||| |||||||| || ||| Sbjct 304 AGTGTACGGCCGTCCTCGAGTTGCTTGCCAGCGAAGATGAGACGTTGCTGGTCAGGCGGG 245 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || ||| ||||||||| Sbjct 244 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGCTGGACTCGACT 185 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | || || || || || || || ||||| |||||||| Sbjct 184 TCGAGGGTGATCGTCTTGCCAGTAAGGGTCTTCACGAAGATCTGCAT 138 Score = 109 bits (120), Expect = 5e-19 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| ||||| || || | || |||||||| || |||||||| |||||| Sbjct 1095 CCACCACGCAGACGGAGCACCAAGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 1036 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| ||| |||| || |||||||||||||| || Sbjct 1035 AGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCCGGGGGA 976 Query 131128 ATTCCTTC 131135 || || || Sbjct 975 ATGCCCTC 968 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | |||||| || | || | |||||||| || ||||||||||| || | Sbjct 820 CCACCACGGAGACGCAGGACGAGGTGAAGAGTCGACTCTTTCTGAATGTTGTAGTCCGAC 761 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| |||||||| || || |||| | ||| ||||| || || ||| Sbjct 760 AGAGTTCGTCCATCCTCAAGCTGCTTCCCGGCAAAGATGAGACGTTGCTGATCAGGGGGG 701 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || |||||||| ||| ||| || | | || | || |||| || || | Sbjct 700 ATGCCCTCTTTGTCCTGGATCTTCGCTTTTACGTTGTCGATTGTGTCGGACGATTCAACT 641 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | || || ||||| |||||||| |||||||||||||| Sbjct 640 TCGAGAGTGATTGTCTTCCCGGTGAGAGTTTTGACGAAAATCTGCAT 594 >seq3392 Length=91092 Score = 114 bits (126), Expect = 1e-20 Identities = 264/393 (67%), Gaps = 11/393 (3%) Strand=Plus/Minus Query 46099 AAGAAAACCGACTGGGCGATGAAGTGGATCA---ACAGCAGCACCGCGACTTTCGCCGAG 46155 ||||| |||| ||||| | |||||||||| ||| | | || || ||||||||| Sbjct 44692 AAGAAGGCCGAGTGGGCTCTCAAGTGGATCACGGACACCCGATCC---ACCTTCGCCGAG 44636 Query 46156 CGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATC 46215 || | | || || || || |||||| |||| || || ||| || || ||||| Sbjct 44635 CGCCTCATCGCTTTCGCTGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTTCGCGTCCATC 44576 Query 46216 TTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCG 46275 || | | || | ||| |||||||||| || || || ||||||||| || ||| Sbjct 44575 TTCTGGCTGAAGAAGCGCGGCCTCATGCCCGGTCTTACCTTCTCCAACGAGCTCATCTCG 44516 Query 46276 CGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCGCGTGCACGAC 46335 || |||||||| || || || |||||||| || || || ||| | | | | | | Sbjct 44515 CGTGACGAGGGTCTTCACACCGACTTTGCTTGCCTGCTCT---TCACCCACCTCCGCCGC 44459 Query 46336 AAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGTGGCCATTGAGAAGGAG 46395 | | ||||| ||||| | || || ||||| || || ||| ||||| Sbjct 44458 CGCCCTCATCCCGAGACCGTCGAAAAGATCATCCGCGAGGCCGTCAAGATCGAGCAGGAG 44399 Query 46396 TTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGC-ACAGTCAATGTGCGA 46454 || |||| | ||| ||||||| | || | ||||||||| | | | || |||||| | Sbjct 44398 TTCCTTACTGACGCCCTGCCCGTCTCGCTCATCGGCATGAACTCGAAACTC-ATGTGCCA 44340 Query 46455 CTACATCGAGTTTGTAGCGGACCGACTGCTCGT 46487 ||||||||||| || || ||||| |||||||| Sbjct 44339 GTACATCGAGTTCGTCGCCGACCGCCTGCTCGT 44307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471992137639680