Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tremella_20fuciformis_20[genbank_20GCA_5F000987905.1_202015-05-04] 3,502 sequences; 23,635,607 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq587 107 4e-18 seq247 102 2e-16 seq3392 100 6e-16 >seq587 Length=43749 Score = 107 bits (118), Expect = 4e-18 Identities = 206/301 (68%), Gaps = 2/301 (1%) Strand=Plus/Minus Query 218509 CCCGTCCCTGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGT 218568 ||| || | |||||| || ||||||||||||| || |||||| | || || Sbjct 13650 CCCATCTCGGACTTCGTCAACAAGGAGCTCATCCTCTTCTCGATGGCCGACAACATCCGA 13591 Query 218569 TCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCA 218628 || || || |||| || || || || || ||||| || |||||||||| Sbjct 13590 TCCATCCCGTCTGTGGCCGACGGTCTGAAACCGGGTCAGCGAAAAATCCTCTTTGGTTGT 13531 Query 218629 TTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAA 218688 |||||||||||||| | || || | ||||| ||||| | || ||||| ||||| Sbjct 13530 TTCAAGCGGAACCTCACGAAGGAGATCAGAGTCGCACAGTTAGCGGGATATGTCTCCGAG 13471 Query 218689 ATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTG-CCATTGTAGGCATGGCACA 218747 | ||| ||||||||||| ||||| ||| || || | | || || || | || || Sbjct 13470 AAGACTGCGTACCATCACGGCGAGCAATCTCT-CACGGCGACTATCGTTGGTCTCGCTCA 13412 Query 218748 GGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCG 218807 | | || ||||| |||||| |||| ||||| | |||||||||||||| ||| | || Sbjct 13411 AAATTTCGTTGGCAGCAACAACGTGAATTTGCTTCAACCCAACGGTCAGTTCGGTACCCG 13352 Query 218808 T 218808 | Sbjct 13351 T 13351 >seq247 Length=30999 Score = 102 bits (112), Expect = 2e-16 Identities = 133/182 (73%), Gaps = 3/182 (2%) Strand=Plus/Minus Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238 || ||||| ||| | || ||||| ||||| |||| || |||| ||||||| || || Sbjct 3965 GGTCCCAACGGTTCCGGCAAGTCGACCCTTGTCAAGCTCTTGACCAACGAGACCGAGCCC 3906 Query 280239 ACTGAGGG--GTC-CGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCAC 280295 | |||| || ||| ||||| || |||||| || || | |||||||| |||||| Sbjct 3905 AACAAGGGCGGTAGCGTCTGGAAACACCCCAACTTGGTCATTGGCTACGTCGCCCAGCAC 3846 Query 280296 GCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGC 280355 || |||||||||||||| ||||||| || | |||||| | | ||||| | ||||| Sbjct 3845 GCCTTCCACCACATCGACCACCACCTCGAGAAGACTCCCCTCGAGTACATGCTCTGGCGG 3786 Query 280356 TA 280357 || Sbjct 3785 TA 3784 Score = 84.2 bits (92), Expect = 4e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 ||||| || || |||||||||||||||||||| ||||| | || ||||| | | Sbjct 4448 GGTTCCCTCTCTGGTGGTTGGAAGATGAAGCTCGCCCTTGCCCGTGCCATCATGTTCAAG 4389 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 ||||| | || || ||||| ||||| ||||||||| ||||| | |||||| ||||| Sbjct 4388 GCCGACATTCTCCTCCTTGACGAGCCTACCAACCACTTGGACGTCCTCAACGTCACCTGG 4329 Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878 | | |||||| ||| || | | | || |||| ||||| |||||||| Sbjct 4328 TTGATCGACTACCTCACCTCGCTCACCCACTGCACCTCGATCATCGTCTCGCACGACTCG 4269 Query 279879 GGCTTC 279884 | |||| Sbjct 4268 GACTTC 4263 >seq3392 Length=91092 Score = 100 bits (110), Expect = 6e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 251545 TATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATG 251604 ||| | || || ||| |||||||| || | |||||||| |||||||| | ||||||| Sbjct 44199 TATGCCGAGACGCGGGACTCGAAGAAGTTGGCCTTGCCCTGGAGAGAGATCATCTCCATG 44258 Query 251605 AAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGG 251664 |||||||||||||| || | || | ||| | ||| || || |||| | |||| Sbjct 44259 AAGTCGAAGGGGTTGCTGACGTTCCAGACCTTCTCGTTGCCGAGAGCGACGAGCAGGCGG 44318 Query 251665 TCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAAT 251714 || || || ||||| | ||||| | ||| |||| ||||||||||| || Sbjct 44319 TCGGCGACGAACTCGATGTACTGGCACATGAGTTTCGAGTTCATGCCGAT 44368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027790681605182