Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tremella_20fuciformis_20[genbank_20GCA_5F000987905.1_202015-05-04] 3,502 sequences; 23,635,607 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq3392 120 7e-22 seq3359 105 1e-17 >seq3392 Length=91092 Score = 120 bits (132), Expect = 7e-22 Identities = 346/524 (66%), Gaps = 9/524 (2%) Strand=Plus/Minus Query 243199 CGAAACGAGCTTTTCGACGCCATCGAAAACATTCCGGCGGTTCATAACAAGGCAAAATGG 243258 || ||| | || ||||| |||||||| | ||| ||| | | || ||||| | ||| Sbjct 44737 CGCAACTACCTCTTCGAGGCCATCGACACCATCCCGTGTATCAAGAAGAAGGCCGAGTGG 44678 Query 243259 GCTCAGAAGTGGCTA---GA-ACCCGGTAAATCATTTGCTGAGCGTCTCGTCGCCTGGGT 243314 |||| |||||| | || ||||| | | | || || ||||| ||| |||| | | Sbjct 44677 GCTCTCAAGTGGATCACGGACACCCGATCCACC-TTCGCCGAGCGCCTCATCGCTTTCGC 44619 Query 243315 GTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCG-CCATCTTTTGGCTGCGGAACA 243373 ||| || || || | || ||||| ||| ||| ||||||| |||||| ||| Sbjct 44618 TGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTTC-GCGTCCATCTTCTGGCTGAAGAAGC 44560 Query 243374 AAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTC 243433 || | ||||| || || | || |||||| ||||| || |||||||| |||| Sbjct 44559 GCGGCCTCATGCCCGGTCTTACCTTCTCCAACGAGCTCATCTCGCGTGACGAGGGTCTTC 44500 Query 243434 ACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTC-GAAACG 243492 || | || | | || | | | | |||| | || ||| | || || Sbjct 44499 ACACCGACTTTGCTTGCCTGCTCTTCACCCACCTCCGCCGCC-GCCCTCATCCCGAGACC 44441 Query 243493 GTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATT 243552 ||| || | |||||| || || || | | ||| |||| ||| || ||||| | Sbjct 44440 GTCGAAAAGATCATCCGCGAGGCCGTCAAGATCGAGCAGGAGTTCCTTACTGACGCCCTG 44381 Query 243553 CCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCC 243612 || | ||| || ||||||||||| |||||||| | ||||||||||| ||||| ||| Sbjct 44380 CCCGTCTCGCTCATCGGCATGAACTCGAAACTCATGTGCCAGTACATCGAGTTCGTCGCC 44321 Query 243613 GACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCC 243672 |||||| | || |||| || || | ||||| || | ||| || |||||||| | | Sbjct 44320 GACCGCCTGCTCGTCGCTCTCGGCAACGAGAAGGTCTGGAACGTCAGCAACCCCTTCGAC 44261 Query 243673 TTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGA 243716 || |||||| | || || || || || || | ||||||||||| Sbjct 44260 TTCATGGAGATGATCTCTCTCCAGGGCAAGGCCAACTTCTTCGA 44217 >seq3359 Length=24196 Score = 105 bits (116), Expect = 1e-17 Identities = 279/421 (66%), Gaps = 4/421 (1%) Strand=Plus/Minus Query 243298 CGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATC 243357 || ||||| || | | || ||||| || || | ||||||||| ||| ||||||| Sbjct 3994 CGCCTCGTTGCGTTTGCCTGTGTTGAGGGCATCTTCTTTTCCGGGTCATTCGCCGCCATC 3935 Query 243358 TTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGT 243417 || ||||| ||| | ||| | ||||| |||||| | || || ||| ||||||| Sbjct 3934 TTCTGGCTCAAGAAGAGGGGTCTTATGCCAGGCCTCACCTTCTCGAATGAGCTCATCAGC 3875 Query 243418 CGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTA-TGTATTCAAAGCTCCAGAACAA 243476 ||||| |||||| ||| | | |||| |||| | || | ||| || | Sbjct 3874 CGCGATGAGGGCACACACACAGACTTCGCAT-GCTTGCTCTACGATCACCTCAAGCATC- 3817 Query 243477 GCTAC-CATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAAT 243535 ||| || |||| || | || ||| | | || || || | || ||| ||||| | Sbjct 3816 GCTGTTCAGTCGATGACGTACACCACATCGTTTCCGAGGCGGTCGCAATCGAGAAGGAGT 3757 Query 243536 TCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGT 243595 || | ||||||| | || |||| ||| |||||||| ||| || | |||||| || | Sbjct 3756 TCCTGATCGACGCTTTGCCTTGCCAGCTCATTGGCATAAACGCTCATCTCATGTCGCAAT 3697 Query 243596 ACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACT 243655 ||||||| || || || || ||| | || |||| || | ||| | |||||| Sbjct 3696 ACATCGAGTTTGTTGCGGATCGCTTGGTCGAGTCGCTGGGATGCCCCAAAATATACAACA 3637 Query 243656 CCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCG 243715 | | || || || | | ||||||||||| || || ||||| || | |||||||||| Sbjct 3636 CGACAAATCCTTTCGATTGGATGGAGCTCATATCCCTCCAAGGCAAGGCAAACTTCTTCG 3577 Query 243716 A 243716 | Sbjct 3576 A 3576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102830514463700