Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tremella_20fuciformis_20[genbank_20GCA_5F000987905.1_202015-05-04] 3,502 sequences; 23,635,607 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq3392 134 1e-26 seq1820 102 8e-17 >seq3392 Length=91092 Score = 134 bits (148), Expect = 1e-26 Identities = 324/485 (67%), Gaps = 13/485 (3%) Strand=Plus/Minus Query 52341 AAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCG---CCACGCTGGCCGAG 52397 || ||||| ||||||| | ||||||||| | |||||| |||| | |||||| Sbjct 44692 AAGAAGGCCGAGTGGGCTCTCAAGTGGATCACG---GACACCCGATCCACCTTCGCCGAG 44636 Query 52398 CGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATC 52457 ||| | | || ||||| ||||||||| | || || |||||| || || ||||| Sbjct 44635 CGCCTCATCGCTTTCGCTGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTTCGCGTCCATC 44576 Query 52458 TTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCG 52517 || | | || | | ||| | |||||||| || || ||| ||||||| | || ||| Sbjct 44575 TTCTGGCTGAAGAAGCGCGGCCTCATGCCCGGTCTTACCTTCTCCAACGAGCTCATCTCG 44516 Query 52518 CGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAG-ACGCGCGTGACCGA 52576 || ||||| || || ||||| |||||||| ||||| || || || || ||| Sbjct 44515 CGTGACGAGGGTCTTCACACCGACTTTGCTTGCCTGCTCTTCACCCACCTCCGCCGCCGC 44456 Query 52577 AAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGA 52636 || | || || || | || || ||||| || ||||| |||| Sbjct 44455 CCTC----ATCCCGAGACCGTCGAAAAGATCATCCGCGAGGCCGTCAAGATCGAGCAGGA 44400 Query 52637 GTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGA 52696 ||| |||| | ||| ||||| ||| ||| | ||||||||| || | ||||||| | Sbjct 44399 GTTCCTTACTGACGCCCTGCCCGTCTCGCTCATCGGCATGAACTCGAAACTCATGTGCCA 44340 Query 52697 GTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA-AAGTACTTCA 52755 |||||||||||| || || || || ||| | || ||| |||| | | ||| || | Sbjct 44339 GTACATCGAGTTCGTCGCCGACCGCCTGCTCGTCGCTCTC-GGCAACGAGAAGGTCTGGA 44281 Query 52756 ACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTT 52815 ||| |||| || || || || ||| | | || || || |||||||| ||||||| | Sbjct 44280 ACGTCAGCAACCCCTTCGACTTCATGGAGATGATCTCTCTCCAGGGCAAGGCCAACTTCT 44221 Query 52816 TCGAG 52820 ||||| Sbjct 44220 TCGAG 44216 >seq1820 Length=19797 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || |||||||||||||| || ||| || ||||| || || || |||| | Sbjct 787 GACTCTTTCTGAATGTTGTAGTCCGACAGAGTTCGTCCATCCTCAAGCTGCTTCCCGGCA 728 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| ||||| || || || || || || || |||||||| ||| || ||||| Sbjct 727 AAGATGAGACGTTGCTGATCAGGGGGGATGCCCTCTTTGTCCTGGATCTTCGCTTTTACG 668 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| ||| || || |||| || | || || || || |||||||| Sbjct 667 TTGTCGATTGTGTCGGACGATTCAACTTCGAGAGTGATTGTCTTCCCGGTGAGAGTTTTG 608 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 607 ACGAAAATCTGCAT 594 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| ||||| |||||||| ||| | ||||| |||||||||||| || || | Sbjct 331 GACTCTTTTTGGATGTTGTAATCGGAAAGTGTACGGCCGTCCTCGAGTTGCTTGCCAGCG 272 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| ||||| || ||||| || || || || || ||||| ||| || || | | Sbjct 271 AAGATGAGACGTTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACA 212 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||||||| | ||||| || |||| || | ||| || ||||| || || || Sbjct 211 TTG-TCGATGGTGTCGCTGGACTCGACTTCGAGGGTGATCGTCTTGCCAGTAAGGGTCTT 153 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 152 CACGAAGATCTGCAT 138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496240676113440