Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tremella_20fuciformis_20[genbank_20GCA_5F000987905.1_202015-05-04] 3,502 sequences; 23,635,607 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1820 116 4e-21 seq3392 100 3e-16 seq611 86.0 6e-12 seq467 84.2 2e-11 >seq1820 Length=19797 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||| | || | || ||||||||||| || ||||||||| Sbjct 364 CCACCGCGGAGACGGAGCACAAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAATCGGAA 305 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || || || || |||||| |||| | || ||||| || || || Sbjct 304 AGTGTACGGCCGTCCTCGAGTTGCTTGCCAGCGAAGATGAGACGTTGCTGGTCAGGCGGG 245 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||||| | |||| |||||| | ||||||| Sbjct 244 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGCTGGACTCGACT 185 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | ||| ||||| || || || || || || |||||||| Sbjct 184 TCGAGGGTGATCGTCTTGCCAGTAAGGGTCTTCACGAAGATCTGCAT 138 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | |||| || | || | || |||||||| ||||| ||||| || Sbjct 821 TCCACCACGGAGACGCAGGACGAGGTGAAGAGTCGACTCTTTCTGAATGTTGTAGTCCGA 762 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || || || ||| || ||||| || || || |||| | || |||||||| || || Sbjct 761 CAGAGTTCGTCCATCCTCAAGCTGCTTCCCGGCAAAGATGAGACGTTGCTGATCAGGGGG 702 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 |||||||| |||||| ||| ||| || | ||||| ||| ||||| | || | Sbjct 701 GATGCCCTCTTTGTCCTGGATCTTCGCTTTTACGTTGT-CGATTGTGTCGGACGATTCAA 643 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||| || | || || ||||| |||||||| || ||||||||||| Sbjct 642 CTTCGAGAGTGATTGTCTTCCCGGTGAGAGTTTTGACGAAAATCTGCAT 594 Score = 93.3 bits (102), Expect = 4e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | |||||||| || || || ||||| |||| | Sbjct 1095 CCACCACGCAGACGGAGCACCAAGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 1036 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || || ||| |||||||||||||||| || || || Sbjct 1035 AGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCCGGGGGA 976 Query 127007 ATGCCCTCC 127015 ||||||||| Sbjct 975 ATGCCCTCC 967 >seq3392 Length=91092 Score = 100 bits (110), Expect = 3e-16 Identities = 289/441 (66%), Gaps = 9/441 (2%) Strand=Plus/Minus Query 47133 GCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCG 47192 ||||| || | ||||||||||| |||||||||| |||||||||| ||| || ||| Sbjct 44641 GCCGAGCGCCTCATCGCTTTCGCTGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTTCGCG 44582 Query 47193 GCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTA 47252 | || || | |||| | || | |||||||| || || || ||||||||| Sbjct 44581 TCCATCTTCTGGCTGAAGAAGCGCGGCCTCATGCCCGGTCTTACCTTCTCCAACGAGCTC 44522 Query 47253 ATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACA-ACACTAGAGT 47311 |||||| | ||||| || || |||||| ||||||| || || || || ||| | Sbjct 44521 ATCTCGCGTGACGAGGGTCTTCACACCGACTTTGCTTGCCTGCTCTTCACCCACCTCCGC 44462 Query 47312 CGATCAAAAGTTGGACGTGCC--CACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATT 47369 || | | | | || |||||| | || | ||| |||||| || Sbjct 44461 CG--CCGCCCT----CATCCCGAGACCGTCGAAAAGATCATCCGCGAGGCCGTCAAGATC 44408 Query 47370 GAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATG 47429 ||| |||||| | | || || ||||||| || | | || |||||| || | | Sbjct 44407 GAGCAGGAGTTCCTTACTGACGCCCTGCCCGTCTCGCTCATCGGCATGAACTCGAAACTC 44348 Query 47430 ATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAG 47489 ||| | |||||||||| || |||||||||||||||||||| || | ||| Sbjct 44347 ATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCGTCGCTCTCGGCAACGAGAAG 44288 Query 47490 ATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACC 47549 | | || | || || ||||| || ||| | | || || ||| |||||||| || Sbjct 44287 GTCTGGAACGTCAGCAACCCCTTCGACTTCATGGAGATGATCTCTCTCCAGGGCAAGGCC 44228 Query 47550 AACTTTTTCGAGAAGCGCGTC 47570 ||||| |||||| |||||| Sbjct 44227 AACTTCTTCGAGTCCCGCGTC 44207 >seq611 Length=5502 Score = 86.0 bits (94), Expect = 6e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 126950 GTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATG 127009 ||||| ||| || ||||| || || ||| ||||||| |||||||| || ||||| ||| Sbjct 200 GTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGAATG 259 Query 127010 CCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCG 127069 |||||||||||| ||| || |||| | |||| ||||| | ||||||||| Sbjct 260 CCCTCCTTGTCCTGGATCTTGGCTTTGACATTGTCGATCGTGTCGCTCGATTCGACTTCG 319 Query 127070 ACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 | ||| | || ||||| || || || || || Sbjct 320 AGGGTAATGGTCTTGCCCGTGAGGGTCTTGAC 351 >seq467 Length=17913 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || ||||||| || ||||| || || || |||||||||||| Sbjct 11019 TCCTCGAGCTGCTTGCCGGCAAAGATCAACCGTTGCTGGTCAGGGGGGATGCCCTCCTTG 10960 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||| ||| ||||| |||| |||| |||||||| ||| || |||| ||| | Sbjct 10959 TCCTGGATCTTCGCCTTGACGTTG-TCGATGGTGTCCGAGGACTCCACCTCGAGGGTGAT 10901 Query 127078 CGTTTTGCCGGTCAG 127092 || || ||||| || Sbjct 10900 GGTCTTCCCGGTAAG 10886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475479984952480