Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tremella_20fuciformis_20[genbank_20GCA_5F000987905.1_202015-05-04] 3,502 sequences; 23,635,607 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1820 98.7 9e-16 >seq1820 Length=19797 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || || || || ||||| || || ||| || ||| || ||| Sbjct 574 ACAAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCC 515 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 || || || || ||| | || | ||||||||||| |||||||| || |||||||| || Sbjct 514 AACTGCTTGCCAGCGAAGATGAGACGTTGCTGGTCAGGCGGAATACCCTCTTTATCCTGG 455 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || ||| || | || | || | ||||| || || ||||| |||||||| | || || Sbjct 454 ATCTTTGCCTTCA-CGTTGTCGATAGTGTCAGATGATTCGACCTCGAGAGTGATGGTCTT 396 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 |||||| || ||||| || || || |||||| Sbjct 395 GCCGGTAAGCGTTTTCACGAAGATCTGCATC 365 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||| | | ||| || || || || || || |||||||| || |||||| Sbjct 367 ATCCCACCGCGGAGACGGAGCACAAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAATCG 308 Query 45171 CTGACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 || || | | || || | ||| || || ||| | || | ||||||||||| | Sbjct 307 --GAAAGTGTACGGCCGTCCTCGAGTTGCTTGCCAGCGAAGATGAGACGTTGCTGGTCAG 250 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 |||| ||||| || || || || || || |||| || | ||||||| |||| Sbjct 249 GCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGCTGGACT 190 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||||| || | ||| ||||| || || || || || || || ||||| Sbjct 189 CGACTTCGAGGGTGATCGTCTTGCCAGTAAGGGTCTTCACGAAGATCTGCAT 138 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/233 (69%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || ||||| | || || || || || || || || || || || || || || Sbjct 823 ATTCCACCACGGAGACGCAGGACGAGGTGAAGAGTCGACTCTTTCTGAATGTTGTAGTCC 764 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | || | ||| || | || || || || | || | |||||||| || | Sbjct 763 --GACAGAGTTCGTCCATCCTCAAGCTGCTTCCCGGCAAAGATGAGACGTTGCTGATCAG 706 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGAC 45287 | || ||||| ||||| || || || || ||| | || | || | |||||||| || Sbjct 705 GGGGGATGCCCTCTTTGTCCTGGATCTTCGCTTTTA-CGTTGTCGATTGTGTCGGACGAT 647 Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||||||||| | || || ||||| |||||||| || ||||| ||||| Sbjct 646 TCAACTTCGAGAGTGATTGTCTTCCCGGTGAGAGTTTTGACGAAAATCTGCAT 594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451983413559920