Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tremella_20fuciformis_20[genbank_20GCA_5F000987905.1_202015-05-04] 3,502 sequences; 23,635,607 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1820 150 4e-31 seq657 105 2e-17 seq611 84.2 5e-11 >seq1820 Length=19797 Score = 150 bits (166), Expect = 4e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| || |||||||| || |||||||| || |||| ||||||||| | | || Sbjct 586 CGAAGTCGAAGTACAAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTG 527 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||||| |||||| || |||||||||||||| |||||||| || ||| || Sbjct 526 CGGCCGTCTTCCAACTGCTTGCCAGCGAAGATGAGACGTTGCTGGTCAGGCGGAATACCC 467 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||| |||||| ||||||| |||| ||||| | || ||| || || | Sbjct 466 TCTTTATCCTGGATCTTTGCCTTCACGTTGTCGATAGTGTCAGATGATTCGACCTCGAGA 407 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || |||||||| || || || Sbjct 406 GTGATGGTCTTGCCGGTAAGCGTTTTCACGAAGATCTG 369 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| ||||| ||||||||||| || || | ||||||||| | || ||| Sbjct 814 CGGAGACGCAGGACGAGGTGAAGAGTCGACTCTTTCTGAATGTTGTAGTCCGACAGAGTT 755 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||| || |||||||| ||||| ||||||||||| ||||| || || || || Sbjct 754 CGTCCATCCTCAAGCTGCTTCCCGGCAAAGATGAGACGTTGCTGATCAGGGGGGATGCCC 695 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||| ||||| || ||| |||| ||||| | | ||| || || | Sbjct 694 TCTTTGTCCTGGATCTTCGCTTTTACGTTGTCGATTGTGTCGGACGATTCAACTTCGAGA 635 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||||||||| || ||||| || Sbjct 634 GTGATTGTCTTCCCGGTGAGAGTTTTGACGAAAATCTG 597 Score = 107 bits (118), Expect = 5e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||||||||| || ||||| ||||||| |||||| || | | || | || || Sbjct 349 AGCACAAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAATCGGAAAGTGTACGGCCGTCC 290 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| || |||||||||||||| |||||||| || || || || ||| Sbjct 289 TCGAGTTGCTTGCCAGCGAAGATGAGACGTTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 230 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| |||||| | | || || || | ||||||||| Sbjct 229 TGGATCTTGGCCTTGACATTGTCGATGGTGTCGCTGGACTCGACTTCGAGGGTGATCGTC 170 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| || || || Sbjct 169 TTGCCAGTAAGGGTCTTCACGAAGATCTG 141 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || |||||||| |||| ||||||||| || ||| | ||||| Sbjct 1080 AGCACCAAGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCC 1021 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 || |||||||| ||||||||||| | |||||||||||||| Sbjct 1020 TCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCCGG 980 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || |||||||| || |||||||||||||| || | || | |||| |||||| ||||| Sbjct 492 CTCATCTTCGCTGGCAAGCAGTTGGAAGACGGCCGCACCCTCTCCGACTACAACATCCAG 551 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 |||||||| || ||||||||||| | ||||||| Sbjct 552 AAAGAGTCGACCCTTCACCTTGTACTTCGACTTCG 586 >seq657 Length=3537 Score = 105 bits (116), Expect = 2e-17 Identities = 101/125 (81%), Gaps = 7/125 (6%) Strand=Plus/Plus Query 43123 AGAACTTGGCTGCGGATTGTCCAATCCTCAACATTTTTACCATACCC-ACGCCATTACGC 43181 || |||||||||||||||||||||||||| | || ||||||||||| | | |||||| | Sbjct 754 AGGACTTGGCTGCGGATTGTCCAATCCTCTGCGTTGTTACCATACCCGAGGTCATTACCC 813 Query 43182 TTGGTGCAACTC--TTT--CGAGAAGC--GGTAGTTGAGGCTCTAAGGAGTTTCCCGCAA 43235 | | || | | ||| ||||| || ||||| |||||||||||||||||||||||| Sbjct 814 TGGCCACACCCCGGTTTCCCGAGATGCTTGGTAGCAGAGGCTCTAAGGAGTTTCCCGCAA 873 Query 43236 TTTGA 43240 ||||| Sbjct 874 TTTGA 878 >seq611 Length=5502 Score = 84.2 bits (92), Expect = 5e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 199452 TGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCT 199511 ||||||||| | ||| | ||||| || |||||||| ||||||||||| | ||||||| Sbjct 186 TGTAGTCAGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCT 245 Query 199512 GGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTG 199571 |||| ||| ||| || || ||||| ||||| || || |||| ||||| Sbjct 246 GGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCTTTGACATTGTCGATCGTGTCGC 305 Query 199572 TTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCAC 199617 | | ||| || || | || || ||||| |||||||| || || || Sbjct 306 TCGATTCGACTTCGAGGGTAATGGTCTTGCCCGTGAGGGTCTTGAC 351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178868702524634