Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tremella_20fuciformis_20[genbank_20GCA_5F000987905.1_202015-05-04] 3,502 sequences; 23,635,607 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq611 129 7e-25 seq1820 111 2e-19 seq467 102 9e-17 >seq611 Length=5502 Score = 129 bits (142), Expect = 7e-25 Identities = 128/166 (77%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 46416 TGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCT 46475 ||||||| || |||||||| | || || ||||||||||||||||| ||||||||||||| Sbjct 186 TGTAGTCAGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCT 245 Query 46476 GGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGC 46535 |||| | || | || |||||||||| |||||| |||| | | | |||||||| Sbjct 246 GGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCTTTGACATTGTCGATCGTGTCGC 305 Query 46536 TCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 ||||||| || || | || ||||| |||||||| || || || || Sbjct 306 TCGATTCGACTTCGAGGGTAATGGTCTTGCCCGTGAGGGTCTTGAC 351 >seq1820 Length=19797 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||| ||||||||||| || ||||| |||| || | ||||||||| ||||| Sbjct 557 CTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCCAACTGCTTGCCAGCGAA 498 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || |||||||| | ||| | | ||| || ||| |||||| ||| | ||| Sbjct 497 GATGAGACGTTGCTGGTCAGGCGGAATACCCTCTTTATCCTGGATCTTTGCCTTCA-CGT 439 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| ||||| || || | |||||||| ||||| || |||||||| | Sbjct 438 TGTCGATAGTGTCAGATGATTCGACCTCGAGAGTGATGGTCTTGCCGGTAAGCGTTTTCA 379 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 378 CGAAGATCTGCAT 366 Score = 100 bits (110), Expect = 3e-16 Identities = 93/118 (79%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||| || | |||| |||||| ||||| ||||||||| |||||||| | Sbjct 1084 ACGGAGCACCAAGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCC 1025 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCC 46495 || |||||||||||||||||||| ||||| ||||||||||| | || | || |||| Sbjct 1024 ATCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCC 967 >seq467 Length=17913 Score = 102 bits (112), Expect = 9e-17 Identities = 119/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 46416 TGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCT 46475 ||||||| || || ||||| |||| ||||||||||||||||| || ||||| || |||| Sbjct 11042 TGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAACCGTTGCT 10983 Query 46476 GGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCG 46534 |||| | || | || |||||||||| ||||||| ||||| ||| | | | ||||| Sbjct 10982 GGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGA-CGTTGTCGATGGTGTCC 10924 Query 46535 CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAG 46572 || ||||| || | |||||||| || || || || Sbjct 10923 GAGGACTCCACCTCGAGGGTGATGGTCTTCCCGGTAAG 10886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565213656689040