Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tremella_20fuciformis_20[genbank_20GCA_5F000987905.1_202015-05-04] 3,502 sequences; 23,635,607 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3392 181 1e-40 seq1820 131 2e-25 seq611 84.2 2e-11 >seq3392 Length=91092 Score = 181 bits (200), Expect = 1e-40 Identities = 330/474 (70%), Gaps = 18/474 (4%) Strand=Plus/Plus Query 132666 CATAAAATCCAAGGGGTTGGCTGT-GTTGTAGTGCTT---GGTGCCGATCAGGTCGACGA 132721 ||| || || ||||||||| ||| ||| || ||| | |||||| || |||||| Sbjct 44255 CATGAAGTCGAAGGGGTTG-CTGACGTTCCAGACCTTCTCGTTGCCGAG-AG--CGACGA 44310 Query 132722 GCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGC 132780 |||| | |||||| |||||||||||||| || ||||| |||||| | || | || | Sbjct 44311 GCAGGCGGTCGGCGACGAACTCGATGTACTGGCACATGAGTTTCG-AGTTCATGCCGATG 44369 Query 132781 AGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACG 132840 || || ||||| || || || || || |||||||| ||| || ||| || | Sbjct 44370 AGCGAGACGGGCAGGGCGTCAGTAAGGAACTCCTGCTCGATCTTGACGGCCTCGCGGATG 44429 Query 132841 ATTTCCCTAACG----CGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCA 132896 || | ||| || | | | |||| | | | || |||| | || ||| Sbjct 44430 ATCTTTTCGACGGTCTCGGGATGAGGGCGGCGGCGG----AGGTGGGTGAAGAGCAGGCA 44485 Query 132897 AGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCC 132956 |||||||||| || | |||||||| | || ||||| |||||| ||| || | || Sbjct 44486 AGCAAAGTCGGTGTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTAAGACC 44545 Query 132957 GGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGAC 133016 ||||||||||||||| || || ||||| || |||| ||||| ||| || ||||||| Sbjct 44546 GGGCATGAGGCCGCGCTTCTTCAGCCAGAAGATGGACGCGAACGAGCCGGAGAAGAAGAT 44605 Query 133017 GCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGAT 133076 |||||||||||| |||||||| | ||||||||| |||| |||| | || | ||| Sbjct 44606 GCCCTCGACGGCAGCGAAAGCGATGAGGCGCTCGGCGAAGGTGGATCGGGTGTCCGTGAT 44665 Query 133077 CCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGC 133130 ||| || ||||| |||||||| | |||| ||||| || || |||||||| Sbjct 44666 CCACTTGAGAGCCCACTCGGCCTTCTTCTTGATACACGGGATGGTGTCGATGGC 44719 >seq1820 Length=19797 Score = 131 bits (144), Expect = 2e-25 Identities = 153/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| |||||||| || ||||| |||||||| |||| ||||| | | Sbjct 366 ATGCAGATCTTCGTGAAAACGCTTACCGGCAAGACCATCACTCTCGAGGTCGAATCATCT 425 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | ||| |||| || |||||||| ||||| | ||||| Sbjct 426 GACACTATCGACAACG-TGAAGGCAAAGATCCAGGATAAAGAGGGTATTCCGCCTGACCA 484 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||| | ||| ||||| ||| |||| |||| ||||||||| ||||||||| Sbjct 485 GCAACGTCTCATCTTCGCTGGCAAGCAGTTGGAAGACGGCCGCACCCTCTCCGACTACAA 544 Query 38423 CATCCAAAAGGAAGCGACGCTGCA 38446 |||||| || || |||| || || Sbjct 545 CATCCAGAAAGAGTCGACCCTTCA 568 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| || |||||| |||| |||||| ||| | Sbjct 138 ATGCAGATCTTCGTGAAGACCCTTACTGGCAAGACGATCACCCTCGAAGTCGAGTCCAGC 197 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 |||| | | | | | || | || |||| ||||| ||||| || |||||| ||||| Sbjct 198 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCAT-CCCGCCTGACCA 256 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||| | ||| ||||| || || || |||| || || || ||| ||||| Sbjct 257 GCAACGTCTCATCTTCGCTGGCAAGCAACTCGAGGACGGCCGTACACTTTCCGATTACAA 316 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||| || | || || || | ||||| ||| Sbjct 317 CATCCAAAAAGAGTCCACCCTCCACCTTGTGCTCCGT 353 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| ||||| || || || ||||| |||| || || | || Sbjct 594 ATGCAGATTTTCGTCAAAACTCTCACCGGGAAGACAATCACTCTCGAAGTTGAATCGTCC 653 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | |||| || |||| ||||||||||| || ||| | || || Sbjct 654 GACACAATCGACAACG-TAAAAGCGAAGATCCAGGACAAAGAGGGCATCCCCCCTGATCA 712 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||| | || || || ||||| || || | || || || |||||||| Sbjct 713 GCAACGTCTCATCTTTGCCGGGAAGCAGCTTGAGGATGGACGAACTCTGTCGGACTACAA 772 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| || || || |||| || || | || |||||| Sbjct 773 CATTCAGAAAGAGTCGACTCTTCACCTCGTCCTGCGT 809 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 38343 GAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAG 38402 ||||| |||||| | ||||| ||||| | || | ||| ||||| ||||| || || | Sbjct 968 GAGGGCATTCCCCCGGACCAGCAGCGATTGATCTTCGCCGGCAAGCAGCTCGAGGATGGC 1027 Query 38403 CGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTG 38462 ||||| || | ||||||||||||||| ||||| | || || || |||||||| ||| || Sbjct 1028 CGCACTCTGAGCGACTACAACATCCAGAAGGAGTCTACACTTCACTTGGTGCTCCGTCTG 1087 Query 38463 AGAGGCGG 38470 | || || Sbjct 1088 CGTGGTGG 1095 >seq611 Length=5502 Score = 84.2 bits (92), Expect = 2e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 38256 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAA 38315 || || || ||||||||||| ||||| ||| |||| ||||| | | ||||| | | Sbjct 351 GTCAAGACCCTCACGGGCAAGACCATTACCCTCGAAGTCGAATCGAGCGACACGATCGAC 292 Query 38316 ACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATT 38375 | | |||| || |||| ||||| ||||| ||||| | ||||| ||||| | || Sbjct 291 AATGTCAAAGCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGCTTGATC 232 Query 38376 TACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||| ||||| ||||| || || | ||||| ||| ||||||| Sbjct 231 TTCGCCGGCAAGCAGCTTGAGGATGGCCGCACTCTCTCTGACTACA 186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500150904935680