Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tremella_20fuciformis_20[genbank_20GCA_5F000987905.1_202015-05-04] 3,502 sequences; 23,635,607 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1542 140 4e-28 seq3392 136 5e-27 seq3359 102 1e-16 >seq1542 Length=14377 Score = 140 bits (154), Expect = 4e-28 Identities = 288/424 (68%), Gaps = 17/424 (4%) Strand=Plus/Plus Query 111726 CTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAG 111785 |||||||||||||| ||||| | |||| ||||| ||| ||||| | || | Sbjct 6381 CTCTTCAACGCTGGCACACCCAACGCCCAGATGTCGTCTTGCTTCCTCGTCGCCATGCGT 6440 Query 111786 GAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGG 111845 || || || || | ||||| |||| |||||||| || ||||| ||||| ||| Sbjct 6441 GATGACTCGATTGACGGCATCTACGACACTCTCAAGACCTGCGCCCAGATCTCCAAGACT 6500 Query 111846 GCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAG 111903 ||||| |||||||| |||||||||| | || | ||||| | |||||| || | Sbjct 6501 GCTGGCGGTATCGGTCTGCACATCCACAACATCCGTGCCAAG--GGCTCGTACATTGCTG 6558 Query 111904 GTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 111963 |||| || || | || | ||||| | || ||||| || | | | || || || | Sbjct 6559 GTACCAACGGCTACTCCAACGGTATCGTCCCTATGCTCCGTGCTTACGATGCTACTGCTC 6618 Query 111964 GCTATGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGC 112017 | || || |||| | ||| ||| | | || || |||| |||| || |||| Sbjct 6619 GATACGTGGACCAGGGTGGCAACAAGCGACCC---GGTGCTTTCGCCATCTACCTCGAGC 6675 Query 112018 CATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG 112077 | |||||||| || ||| | || ||||| || |||| ||||| ||| | ||||| | Sbjct 6676 CTTGGCACGCAGACATCTTCGACTTCCTCGACCTGCGAAAGAACCACGGTAAAGAGGAAG 6735 Query 112078 --CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGT 112135 |||| | || |||||||||| ||| || ||||| | || |||||||||||| | || Sbjct 6736 TCCGCGCT--CGTGATCTCTTCTACGCACTTTGGATCTCCGACCTCTTCATGAAGCGCGT 6793 Query 112136 TGAG 112139 ||| Sbjct 6794 CGAG 6797 >seq3392 Length=91092 Score = 136 bits (150), Expect = 5e-27 Identities = 180/246 (73%), Gaps = 8/246 (3%) Strand=Plus/Minus Query 102090 CTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 102149 ||||| || |||||| | || | || ||||| | ||||| || || |||||| | ||| Sbjct 44728 CTCTTCGAGGCCATCGACACCATCCCGTGTATCAAGAAGAAGGCCGAGTGGGCTCTCAAG 44669 Query 102150 TGGTTTGATACAAAGTCGCGTTCC---TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTT 102206 ||| | || | | || ||| || || ||||| ||| |||| || || || Sbjct 44668 TGGATC---ACGGACACCCGATCCACCTTCGCCGAGCGCCTCATCGCTTTCGCTGCCGTC 44612 Query 102207 GAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCT 102265 ||||| ||||||||||| || || ||| ||| | || | ||||| |||||||| || || Sbjct 44611 GAGGGCATCTTCTTCTCCGGCTCGTTC-GCGTCCATCTTCTGGCTGAAGAAGCGCGGCCT 44553 Query 102266 CATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGA 102325 |||||| ||||| ||||||||||||||| ||||| ||||||||||| || ||| || Sbjct 44552 CATGCCCGGTCTTACCTTCTCCAACGAGCTCATCTCGCGTGACGAGGGTCTTCACACCGA 44493 Query 102326 GTTTGC 102331 ||||| Sbjct 44492 CTTTGC 44487 >seq3359 Length=24196 Score = 102 bits (112), Expect = 1e-16 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 102183 CGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATT 102242 || ||| | || ||||| ||||||||||| |||||||| || || || ||| ||| || Sbjct 3994 CGCCTCGTTGCGTTTGCCTGTGTTGAGGGCATCTTCTTTTCCGGGTCATTCGCCGCCATC 3935 Query 102243 TATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCT 102302 | |||||||||||| | ||||| |||||||| ||| |||||| || ||||| ||| Sbjct 3934 TTCTGGCTCAAGAAGAGGGGTCTTATGCCAGGCCTCACCTTCTCGAATGAGCTCATCAGC 3875 Query 102303 CGTGACGAGGG 102313 || || ||||| Sbjct 3874 CGCGATGAGGG 3864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620715227001440