Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tremella_20fuciformis_20[genbank_20GCA_5F000987905.1_202015-05-04] 3,502 sequences; 23,635,607 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1820 145 2e-29 seq467 93.3 9e-14 seq611 91.5 3e-13 >seq1820 Length=19797 Score = 145 bits (160), Expect = 2e-29 Identities = 160/211 (76%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || |||||||||||||| || |||||||||| ||| || | || || ||| Sbjct 346 ACAAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAATCGGAAAGTGTACGGCCGTCCTCG 287 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || |||||||| || ||||| ||||| || || ||||| || ||||| || Sbjct 286 AGTTGCTTGCCAGCGAAGATGAGACGTTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGG 227 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGT--CCGAACTTTCCACTTCAAGGGTAACCGTCT 195109 || || |||||| || || ||||||| | | || || ||||| ||||| | ||||| Sbjct 226 ATCTTGGCCTTGACATTGTCGATGGTGTCGCTGGAC--TCGACTTCGAGGGTGATCGTCT 169 Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || | || || ||||| | ||||| Sbjct 168 TGCCAGTAAGGGTCTTCACGAAGATCTGCAT 138 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||||||||| |||||||| ||||| ||||| || | ||||||| ||||| || Sbjct 802 ACGAGGTGAAGAGTCGACTCTTTCTGAATGTTGTAGTCCGACAGAGTTCGTCCATCCTCA 743 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || ||||| || || || || ||||| |||||||| || Sbjct 742 AGCTGCTTCCCGGCAAAGATGAGACGTTGCTGATCAGGGGGGATGCCCTCTTTGTCCTGG 683 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || || ||||| || || ||||| || ||| ||||| || || | ||||| Sbjct 682 ATCTTCGCTTTTACGTTGTCGATTGTGTCGGACGATTCAACTTCGAGAGTGATTGTCTTC 623 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | |||||| ||||| | ||||| Sbjct 622 CCGGTGAGAGTTTTGACGAAAATCTGCAT 594 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| || |||||||| || || ||||| |||| || || | || ||||| Sbjct 574 ACAAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCC 515 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || |||||||| || ||||| ||||| || ||||| || ||||| || || Sbjct 514 AACTGCTTGCCAGCGAAGATGAGACGTTGCTGGTCAGGCGGAATACCCTCTTTATCCTGG 455 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| ||| ||||| || || ||||| || ||| || || || || | ||||| Sbjct 454 ATCTTTGCCTTCACGTTGTCGATAGTGTCAGATGATTCGACCTCGAGAGTGATGGTCTTG 395 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| ||||| | ||||| Sbjct 394 CCGGTAAGCGTTTTCACGAAGATCTGCAT 366 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || ||||| || || || ||||| ||| ||||| | ||||| |||||||| Sbjct 1072 GTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCGAGCTG 1013 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 ||| || |||||||| | ||| || ||||| || |||||||| || Sbjct 1012 CTTGCCGGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTC 968 >seq467 Length=17913 Score = 93.3 bits (102), Expect = 9e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || || ||||||||||| || || ||||| | ||||| ||||| || || ||||| || Sbjct 11022 CCGTCCTCGAGCTGCTTGCCGGCAAAGATCAACCGTTGCTGGTCAGGGGGGATGCCCTCC 10963 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| || || || ||||||||| || ||||||||||| ||||| || ||||| Sbjct 10962 TTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACCTCGAGGGTG 10903 Query 195103 ACCGTCTTTCCTGT 195116 | ||||| || || Sbjct 10902 ATGGTCTTCCCGGT 10889 >seq611 Length=5502 Score = 91.5 bits (100), Expect = 3e-13 Identities = 115/157 (73%), Gaps = 6/157 (4%) Strand=Plus/Plus Query 194963 TGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTT 195022 |||| || | ||||| | ||||| || |||||||| || |||||||| | || || | Sbjct 186 TGTAGTCAGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCT 245 Query 195023 GGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTC-- 195080 |||| ||||||||||| || ||||| || || || ||||| || || || ||||| Sbjct 246 GGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCTTTGACATTGTCGATCGTGTCGC 305 Query 195081 -CGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| ||| ||||| ||||||| ||||| || || Sbjct 306 TCGA---TTCGACTTCGAGGGTAATGGTCTTGCCCGT 339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109431818254034