Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tremella_20fuciformis_20[genbank_20GCA_5F000987905.1_202015-05-04] 3,502 sequences; 23,635,607 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1820 109 4e-19 >seq1820 Length=19797 Score = 109 bits (120), Expect = 4e-19 Identities = 143/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||||||||| |||||||| || ||||| |||| || ||||| || |||||||| Sbjct 784 TCTTTCTGAATGTTGTAGTCCGACAGAGTTCGTCCATCCTCAAGCTGCTTCCCGGCAAAG 725 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || |||||||| || | || | ||||| ||||| |||||| ||| || Sbjct 724 ATGAGACGTTGCTGATCAGGGGGGATGCCCTCTTTGTCCTGGATCTTCGCTTTTAC---- 669 Query 34911 GCTATCGATT-CACCGGCC---TCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | | |||||| ||| | ||||| |||| || || || || || |||||||| || Sbjct 668 GTTGTCGATTGTGTCGGACGATTCAACTTCGAGAGTGATTGTCTTCCCGGTGAGAGTTTT 609 Query 34967 CACAAAGATCTGCATA 34982 || || ||||||||| Sbjct 608 GACGAAAATCTGCATA 593 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 ||||| || ||||| || || ||||| | || | || || || || || || || || Sbjct 328 TCTTTTTGGATGTTGTAATCGGAAAGTGTACGGCCGTCCTCGAGTTGCTTGCCAGCGAAG 269 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||||||||| |||| | ||||||||||| ||||| ||||| || Sbjct 268 ATGAGACGTTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGAC--AT 211 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| || | || ||| || |||| ||| || || || || || || ||||| Sbjct 210 --TGTCGATGGTGTCGCTGGACTCGACTTCGAGGGTGATCGTCTTGCCAGTAAGGGTCTT 153 Query 34967 CACAAAGATCTGCATA 34982 ||| |||||||||||| Sbjct 152 CACGAAGATCTGCATA 137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324619744435056