Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tremella_20fuciformis_20[genbank_20GCA_5F000987905.1_202015-05-04] 3,502 sequences; 23,635,607 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq3392 179 5e-39 seq1542 159 4e-33 seq261 149 8e-30 seq3359 129 7e-24 seq331 104 3e-16 seq1382 98.7 1e-14 seq3255 86.0 8e-11 >seq3392 Length=91092 Score = 179 bits (198), Expect = 5e-39 Identities = 216/290 (74%), Gaps = 13/290 (4%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| || ||| | |||||| |||| || |||||||||||||||||||| Sbjct 44504 ACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTAAGACCGGGCATGAGGCCGCGCTT 44563 Query 869239 CTTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 869297 ||| ||||| ||||||| ||| ||| ||| ||||| ||||||||||||||||| || | Sbjct 44564 CTTCAGCCAGAAGATGGACGC-GAACGAGCCGGAGAAGAAGATGCCCTCGACGGCAGCGA 44622 Query 869298 AGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCC 869357 | ||||||| |||||||| |||||| || ||| |||||||||| | |||| Sbjct 44623 AAGCGATGAGGCGCTCGGCGAAGGTGGATCGGGTGTCC---GTGATCCACTTGAGAGCCC 44679 Query 869358 AGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTT 869417 | |||||||| ||| | | |||| | ||||||||||| ||||||| | || Sbjct 44680 ACTCGGCCTTCTTCTTGATACACGGGATGGTGTCGATGGCCTCGAAGAGGTAG----TTG 44735 Query 869418 CGGCCG----GGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 |||| | |||||||| ||||||||||| ||||| || |||||||| Sbjct 44736 CGGCGGTCGTTGTCCTTGATGTAGGTGTCGATGAGGAGTGAGTAGGTCTC 44785 Score = 168 bits (186), Expect = 8e-36 Identities = 226/307 (74%), Gaps = 13/307 (4%) Strand=Plus/Plus Query 868709 ACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAAC 868768 ||||| |||||| ||||||| |||||||| ||| ||||||| |||||| | ||| Sbjct 44208 ACGCGGGACTCGAAGAAGTTGGCCTTGCCCTGGAGAGAGATCATCTCCATGAAGTCGAAG 44267 Query 868769 GGGTTG--GGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGA 868826 |||||| | ||| | || ||| ||| ||||| | |||||||||||||||||| Sbjct 44268 GGGTTGCTGACGT--TCCAGACCTTCTCGTTGCCGAGAGCGACGAGCAGGCGGTCGGCGA 44325 Query 868827 CAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACCGGCAGCG 868886 | ||||||||||||||||||||||| | ||||||||||||||||| || ||||| | Sbjct 44326 CGAACTCGATGTACTGGCACATGAGTTTCGAGTTCATGCCGATGAGCGAGACGGGCAGGG 44385 Query 868887 ACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCT----GCCTGGGC 868942 || | | ||||| | |||||||| |||||||||| |||||||| | | || | Sbjct 44386 CGTCAGTAAGGAACTCCTGCTCGATCTTGACGGCCTCGCGGATGATCTTTTCGAC-GGTC 44444 Query 868943 ACGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTCGCAGTGC 869002 || || |||||| | | ||| ||| |||||||||| ||||||||| ||| Sbjct 44445 TCG--GGATGAGGGC-GGCGGCGGAGGTGGGTGAAGAGCAGGCAAGCAAAGTCGGTGTGA 44501 Query 869003 A-ACCCT 869008 | ||||| Sbjct 44502 AGACCCT 44508 >seq1542 Length=14377 Score = 159 bits (176), Expect = 4e-33 Identities = 332/499 (67%), Gaps = 16/499 (3%) Strand=Plus/Minus Query 1628110 GGCAGGGCCACGCTGGAAAGGTTGCAAGTCGCCACTTCCGTGGGCGACGAAAACTGGACG 1628169 |||||||| | || ||||||||| || ||||| ||| | || ||| || | Sbjct 7123 GGCAGGGCGAGCGAGGCGAGGTTGCAAACGGCGACTTCATCGGGAGCAGAGTACTCGATG 7064 Query 1628170 ATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTCAGG 1628229 ||||| ||||| ||||||| |||| | | || || |||| ||||||||||| | || Sbjct 7063 ATCTCAGTGCAGAGGTTGGACGACTTGATTGTGCCGAGGTGCTGCTGGTTGGACTTGCGG 7004 Query 1628230 TTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACGATG 1628289 ||| |||||||||||| |||||| | || | ||||||||| |||| ||| ||| |||| Sbjct 7003 TTGGCGGCGTCCTTGTACAGCATGAAAGGTCCACCGGTCTCGGTCTGGGCCTCGAGGATG 6944 Query 1628290 GCCGACCAGATCTGGCGCGC------GGGCA--CGACAGTCCGCGCGCGGCCCTNNNNNN 1628341 || |||||| || | || || | |||| || || ||||| | Sbjct 6943 GCGAACCAGAGCTTCTGAGCCTTGATGGTCTTGCGAC---CCTTGC-CGGCCTTCTCGTA 6888 Query 1628342 NNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGCCT 1628401 || ||| | | || ||| || ||||||||| || Sbjct 6887 GCCCTCGTAGAGCTTC----TCGAAGTCATCCGAGTGGCAGTCAGCCAGGCCGGGGCACT 6832 Query 1628402 CGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTCAC 1628461 ||| || || | || | |||||||||| ||| | | |||| ||| |||||||| Sbjct 6831 CGGCGGGGCACATCAGAGTCCAGTCGCCATCGGACTCGACGCGCTTCATGAAGAGGTCGG 6772 Query 1628462 ACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTT 1628521 | |||| |||||||| ||||| || || || ||| ||||| || |||||||||||| Sbjct 6771 AGATCCAAAGTGCGTAGAAGAGATCACGAGCGCGGACTTCCTCTTTACCGTGGTTCTTTC 6712 Query 1628522 TGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGC 1628581 |||||||| |||||| ||||| |||||||| ||||| |||||| ||| || || | Sbjct 6711 GCAGGTCGAGGAAGTCGAAGATGTCTGCGTGCCAAGGCTCGAGGTAGATGGCGAAAGCAC 6652 Query 1628582 CCTTGCGCTTGCCGCCGCC 1628600 | |||||| ||| || Sbjct 6651 CGGGTCGCTTGTTGCCACC 6633 Score = 132 bits (146), Expect = 6e-25 Identities = 187/257 (73%), Gaps = 8/257 (3%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTG---TCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 |||||| ||||| || || || |||| ||| | |||||||| || |||| ||||| Sbjct 6632 CTGGTCCACGTATCGAGCAGTAGCATCGT--AAG-CACGGAGCATAGGGACGATACCGTT 6576 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCG-GCAA 1630180 ||| | ||||||||| || || | ||| | ||| ||| || | ||||| | ||| Sbjct 6575 GGAGTAGCCGTTGGTACCAGCAATGTACGAGCCCTTGGCACGGATGTTGTGGATGTGCAG 6516 Query 1630181 AGCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGC 1630240 | ||||| ||||| || | ||||||||| | ||||| ||||| ||||||||||||| Sbjct 6515 A-CCGATACCGCCAGCAGTCTTGGAGATCTGGGCGCAGGTCTTGAGAGTGTCGTAGATGC 6457 Query 1630241 CCTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCG 1630300 | || |||||||| | |||| | ||||| ||||| ||||| | || | || | | Sbjct 6456 CGTCAATCGAGTCATCACGCATGGCGACGAGGAAGCAAGACGACATCTGGGCGTTGGGTG 6397 Query 1630301 TGCCGGCGTTGAAGAGC 1630317 |||| |||||||||||| Sbjct 6396 TGCCAGCGTTGAAGAGC 6380 >seq261 Length=12248 Score = 149 bits (164), Expect = 8e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18256 CAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAAC 18315 || || || || ||| ||||| | ||||||||| |||| ||||||| | ||| |||| Sbjct 4275 CAATCCGGGACCGAGCACGGCGTGACGCTCGGCACGCCGATCGGCCTGCTCGTGCACAAC 4216 Query 18316 CGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGGTGCCGCGGCCCTCACACGCC 18375 ||||||||||| |||||| |||| | | | || || || || |||||| Sbjct 4215 AAGGACCAGCGGCCACACGACTACGCCGAGACCGACCTCTTCCCCCGCCCGTCGCACGCC 4156 Query 18376 GACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCT 18435 |||||||| ||| | |||||||||||| ||||||| || || ||||| || ||| |||| Sbjct 4155 GACTACACATACCTCGCCAAGTACGGCGTCAAGGCATCCTCTGGCGGCGGACGGGCGTCC 4096 Query 18436 GCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482 || ||||||||| || |||||| ||||| || || |||| ||||| Sbjct 4095 GCGCGCGAGACCATCGGGCGCGTGGCCGCTGGGGCCATCGCGGAGAA 4049 >seq3359 Length=24196 Score = 129 bits (142), Expect = 7e-24 Identities = 166/226 (73%), Gaps = 5/226 (2%) Strand=Plus/Plus Query 868709 ACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAAC 868768 |||||| |||||| ||||| | |||||| | ||| || || | ||||||||| ||| Sbjct 3567 ACGCGCGACTCGAAGAAGTTTGCCTTGCCTTGGAGGGATATGAGCTCCATCCAATCGAAA 3626 Query 868769 GGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGACA 868828 || || | ||| ||||| || |||||| |||||| ||| || ||| || || ||| Sbjct 3627 GGATTTGTCGTGTTGTATATTTTGGGGCATCCCAGCGACTCGACCAAGCGATCCGCAACA 3686 Query 868829 AACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGC-GCCACCGGCAGCGA 868887 ||||||||||| || ||||||| ||||| ||||| |||||| | || |||| | Sbjct 3687 AACTCGATGTATTGCGACATGAGATGAGCGTTTATGCCAATGAGCTGGCA-AGGCAAAGC 3745 Query 868888 CTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCG---ACGATG 868930 ||| ||| ||||| |||||||| |||| |||||| |||||| Sbjct 3746 GTCGATCAGGAACTCCTTCTCGATTGCGACCGCCTCGGAAACGATG 3791 >seq331 Length=83702 Score = 104 bits (114), Expect = 3e-16 Identities = 224/328 (68%), Gaps = 19/328 (6%) Strand=Plus/Minus Query 1726704 GCACGGCGTCGAGTGCCGTCGCCACGCTCCCGTCGGTGCCGTTCTTGAAGCCGATGGCCA 1726763 ||| |||||||| ||| |||| ||||| |||||||||||||||||||||| | Sbjct 62703 GCATGGCGTCGATGGCCACGCCCACCGAACCGTCCGTGCCGTTCTTGAAGCCGATGGGGA 62644 Query 1726764 GCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCTCGGTCGTGCGCGCGCCCACGG 1726823 || | |||| || | ||||||||| | ||| |||||| ||||| ||||| | || Sbjct 62643 ACGACGCGCCCGAGGCGAGCTCGCGGTGTAGCTGCGACTCGGTGGTGCGTGCGCCGATGG 62584 Query 1726824 CGCCCCACGCCACCAGGTCTGC---CAAATAAGGGGCCACCAGA-GGACT-GAGAAACTC 1726878 ||||||| | | ||||| || || | |||| ||| || | ||| | ||| Sbjct 62583 CGCCCCAGGTGATGAGGTCCGCGATGAACTGCGGGG-----AGATGGTGTCGAGCAGCTC 62529 Query 1726879 GACGGCCACGGGCTGATCGACGGCGACGACGAGATCGCGCAACAG---GCGGCGCGACGC 1726935 | | | |||||| | | |||| || | |||| || || |||| || | || Sbjct 62528 GCAGCCGACGGGCATGCCCATGGCGTTGATG---TCGCACAGGAGCTCGCGG-GCCATGC 62473 Query 1726936 CGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTCGCTGGCCAGGCCCTT 1726995 |||||| | | | | |||| ||||| | |||||||||| || |||||| || Sbjct 62472 --GCAGGCCTTTGTTGATCTTGAACGAGCCGTCAATGTCGGGGTCGTTGATCAGGCCTTT 62415 Query 1726996 CCACCCGACGGTCGTGCGCGGCTTTTCG 1727023 ||| |||||||||||||| ||||| ||| Sbjct 62414 CCAGCCGACGGTCGTGCGTGGCTTCTCG 62387 >seq1382 Length=14383 Score = 98.7 bits (108), Expect = 1e-14 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 1574109 ACGTCGGCGGCCCAGCAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGC 1574168 ||| | | ||| |||||||| ||||| || ||||| | ||| ||||||||||||| Sbjct 10570 ACGGCCGGGGCGCAGCAGGCGCTGCGCCGGACGATGGAGATATACAGCAACACGACGCGC 10511 Query 1574169 TTTGCCCTGGCGTGCAACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCC 1574228 || || || |||||||||| |||| | | |||||||| | |||| ||||||||| Sbjct 10510 TTCGCGCTCGCGTGCAACATGTCGAACAAGATCATCGAGCCGATCCAGTCGCGCTGCGCC 10451 Query 1574229 ATTCTGCGCTTTGTGCGCCTGGGTGACGCCCAGATACGCGCGCGCCT 1574275 || ||||||| |||||| | |||||| || | | | |||||| Sbjct 10450 ATCCTGCGCTACAGCCGCCTGCGGGACGCCGAGGTGCTCAAGCGCCT 10404 >seq3255 Length=25277 Score = 86.0 bits (94), Expect = 8e-11 Identities = 97/127 (76%), Gaps = 5/127 (4%) Strand=Plus/Minus Query 23381 CTTTAGCGGCGTGCTCAACGTGCTCGACGGCTTCAGCGACTACC-AGGACGGCATGGTGG 23439 |||| |||| ||||||||| ||| |||||| || ||| | | | |||| | ||| Sbjct 24492 CTTTTCCGGCCTGCTCAACGCGCTGGACGGCGTC-GCGTCGAGCGAGGAGCG---GGTCA 24437 Query 23440 TCATCATGACGGCCAACCACGTGGGCAAGATCGACCCGGCGCTGCTCCGTCCCGGCCGGA 23499 || |||||||| |||||||| | | |||| | ||||||||||| |||| |||||||| Sbjct 24436 TCTTCATGACGACCAACCACTTTGCCAAGCTTGACCCGGCGCTCATCCGGCCCGGCCGCG 24377 Query 23500 TGGACGT 23506 ||||||| Sbjct 24376 TGGACGT 24370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106851809480134