Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tremella_20fuciformis_20[genbank_20GCA_5F000987905.1_202015-05-04] 3,502 sequences; 23,635,607 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3392 181 2e-39 seq1542 159 5e-33 seq1382 86.0 1e-10 >seq3392 Length=91092 Score = 181 bits (200), Expect = 2e-39 Identities = 224/302 (74%), Gaps = 7/302 (2%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| || ||| | |||||| ||| || |||||||||||||||||||| Sbjct 44504 ACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTAAGACCGGGCATGAGGCCGCGCTT 44563 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||| ||||| ||||||| ||| ||| ||||| ||||||||||||||||| || || Sbjct 44564 CTTCAGCCAGAAGATGGACGCGAACGAGCCGGAGAAGAAGATGCCCTCGACGGCAGCGAA 44623 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 ||| ||| |||||||| || ||| || || |||||||||| | ||||| Sbjct 44624 AGCGATGAGGCGCTCGGCGAAGGTGGATCGGGTGTC---CGTGATCCACTTGAGAGCCCA 44680 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTC-T 794578 ||| ||||| ||| | | | || | ||||||||||| ||||||| || | | Sbjct 44681 CTCGGCCTTCTTCTTGATACACGGGATGGTGTCGATGGCCTCGAAGAGGTAGT--TGCGG 44738 Query 794579 CGACCG-GGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTT 794637 || || |||||||| |||||||||||||||||| ||||||||||| ||||||||||| Sbjct 44739 CGGTCGTTGTCCTTGATGTAGGTGTCGATGAGGAGTGAGTAGGTCTCAGAGTGGATGTTC 44798 Query 794638 TC 794639 || Sbjct 44799 TC 44800 Score = 172 bits (190), Expect = 9e-37 Identities = 245/334 (73%), Gaps = 18/334 (5%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| |||| ||||| || | ||||| |||||| ||||||| |||||||| || Sbjct 44182 TGACACCCGACTTGGAGTATGCCGAGACGCGGGACTCGAAGAAGTTGGCCTTGCCCTGGA 44241 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGT--AGTGCTTCTCGCACCC 794008 | ||||||| |||||| | ||| |||||| | | | | | || ||||||| || Sbjct 44242 GAGAGATCATCTCCATGAAGTCGAAGGGGTTG-CTGAC-GTTCCAGACCTTCTCGTTGCC 44299 Query 794009 GAG--CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCG 794066 ||| ||||| |||||||||||||||||||| || ||||||||||||||||| | | Sbjct 44300 GAGAGCGACG--AGCAGGCGGTCGGCGACGAACTCGATGTACTGGCACATGAGTTTCGAG 44357 Query 794067 TTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACG 794126 |||||||||||||||| |||||||| | || | | ||||| | |||||||| |||| Sbjct 44358 TTCATGCCGATGAGCGAGACGGGCAGGGCGTCAGTAAGGAACTCCTGCTCGATCTTGACG 44417 Query 794127 GCCTCGATGATGATCT----GCCTGGGCACGTCGGACGACGGCTTGTCGAC-GAGCATCG 794181 |||||| |||||||| | | || | || ||| || ||| | || | ||| | Sbjct 44418 GCCTCGCGGATGATCTTTTCGAC-GGTCTCG--GGATGAGGGC--GGCGGCGGAGGTGGG 44472 Query 794182 TGTAGAGCAGGCAGGCAAAGTCGCAATGCAGACC 794215 || |||||||||| ||||||||| || ||||| Sbjct 44473 TGAAGAGCAGGCAAGCAAAGTCGGTGTGAAGACC 44506 Score = 93.3 bits (102), Expect = 7e-13 Identities = 110/148 (74%), Gaps = 11/148 (7%) Strand=Plus/Plus Query 796216 GCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGCGAG--- 796272 || ||||| |||||||||||||||| ||| || | ||||||| |||| | ||| | Sbjct 44986 GCAGCGAAGAAGGCGAGGACGTGCTCGATGAAATATCGCTCGTTGTCGTTAAGCTTGTTC 45045 Query 796273 ACCCAGTGGACCGTG----TCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328 |||||| |||| || | | |||||| || |||||||| ||||| |||||||| Sbjct 45046 TCCCAGT----CGTGAAGATCAGGGGCGAGGTTGATCTCCTCGGATGTCCAGAAGGAGGC 45101 Query 796329 CTCGGCCTTTTTGTACATCTCCCATATC 796356 | ||||| |||||||||| ||| ||| Sbjct 45102 TTGGGCCTGCTTGTACATCTGCCAGATC 45129 >seq1542 Length=14377 Score = 159 bits (176), Expect = 5e-33 Identities = 301/444 (68%), Gaps = 10/444 (2%) Strand=Plus/Minus Query 2071574 ACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGC 2071633 ||| || || ||| ||||| ||||||| |||| | | ||||| |||| |||||||||| Sbjct 7071 ACTCGATGATCTCAGTGCAGAGGTTGGACGACTTGATTGTGCCGAGGTGCTGCTGGTTGG 7012 Query 2071634 TGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCG 2071693 | ||||| |||||||||||| ||||||| | || |||| |||||| |||| ||| Sbjct 7011 ACTTGCGGTTGGCGGCGTCCTTGTACAGCATGAAAGGTCCACCGGTCTCGGTCTGGGCCT 6952 Query 2071694 TGACGATGGCCGACCAAA--TTTGGCGC---GCGGGCACCGAGGTCCTCGCGCGGCCCTN 2071748 || |||||| |||| | || | || | || | | ||| || ||||| | Sbjct 6951 CGAGGATGGCGAACCAGAGCTTCTGAGCCTTGATGGTCTTGCGACCCTTGC-CGGCCTTC 6893 Query 2071749 NNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGG 2071808 |||| || ||| | | |||||| || ||||||||| Sbjct 6892 TCGTAGCCCTCGT----AGAGCTTCTCGAAGTCATCCGAGTGGCAGTCAGCCAGGCCGGG 6837 Query 2071809 CGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAG 2071868 ||||| ||||| | || | ||||||||| | | | | ||||| ||| || || Sbjct 6836 GCACTCGGCGGGGCACATCAGAGTCCAGTCGCCATCGGACTCGACGCGCTTCATGAAGAG 6777 Query 2071869 GTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTT 2071928 |||| | |||| || |||| |||||||| || || ||| ||||| || |||||||| Sbjct 6776 GTCGGAGATCCAAAGTGCGTAGAAGAGATCACGAGCGCGGACTTCCTCTTTACCGTGGTT 6717 Query 2071929 CTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAA 2071988 |||| ||||||||| |||||| || ||| |||||||| ||||| |||||| ||| || Sbjct 6716 CTTTCGCAGGTCGAGGAAGTCGAAGATGTCTGCGTGCCAAGGCTCGAGGTAGATGGCGAA 6657 Query 2071989 GGCGCCCTTGCGCTTGCCGCCGCC 2072012 || || |||||| ||| || Sbjct 6656 AGCACCGGGTCGCTTGTTGCCACC 6633 Score = 105 bits (116), Expect = 1e-16 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 2073574 CGGAGCATGGGCACAAGGCCGTTGGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAG 2073633 |||||||| || || | |||||||| | ||||||||| || || | ||| | |||| | Sbjct 6598 CGGAGCATAGGGACGATACCGTTGGAGTAGCCGTTGGTACCAGCAATGTACGAGCCCTTG 6539 Query 2073634 GCGCGCACCTTGTGCGCG-GCAAAGCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCA 2073692 || || | ||||| | ||| | ||||| ||||| || | ||||||||| | ||||| Sbjct 6538 GCACGGATGTTGTGGATGTGCAGA-CCGATACCGCCAGCAGTCTTGGAGATCTGGGCGCA 6480 Query 2073693 CTTTTTCAGCGTCTCGTAGATGCCCTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCA 2073752 | || || || ||||||||||| || |||||||| | |||| | | || ||||| Sbjct 6479 GGTCTTGAGAGTGTCGTAGATGCCGTCAATCGAGTCATCACGCATGGCGACGAGGAAGCA 6420 Query 2073753 CGACGAGTTTTGCGGGCGCGCCGTGCCGGCATTGAAGAGC 2073792 ||||| | || | | | ||||| || ||||||||| Sbjct 6419 AGACGACATCTGGGCGTTGGGTGTGCCAGCGTTGAAGAGC 6380 >seq1382 Length=14383 Score = 86.0 bits (94), Expect = 1e-10 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 2019246 ACGTCGGCGGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGG 2019305 ||| | | ||| |||||||| || || ||| ||||| | |||| |||||||||||| Sbjct 10570 ACGGCCGGGGCGCAGCAGGCGCTGCGCCGGACGATGGAGATATACAGCAACACGACGCGC 10511 Query 2019306 TTTGCGCTGGCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCC 2019365 || ||||| || ||||||| |||| | | ||||||| | ||||| || |||||| Sbjct 10510 TTCGCGCTCGCGTGCAACATGTCGAACAAGATCATCGAGCCGATCCAGTCGCGCTGCGCC 10451 Query 2019366 ATCTTGCGCT 2019375 ||| |||||| Sbjct 10450 ATCCTGCGCT 10441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915873876287378