Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tremella_20fuciformis_20[genbank_20GCA_5F000987905.1_202015-05-04] 3,502 sequences; 23,635,607 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1820 113 3e-20 seq611 93.3 3e-14 >seq1820 Length=19797 Score = 113 bits (124), Expect = 3e-20 Identities = 156/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||| | |||| ||| || || ||||| || || || || | || | || Sbjct 349 AGCACAAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAATCGGAAAGTGTACGGCCGTCC 290 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| || |||||||| || ||||||||||| |||| | ||||||||||| Sbjct 289 TCGAGTTGCTTGCCAGCGAAGATGAGACGTTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 230 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || | ||||| || ||| |||||| || | ||| || Sbjct 229 TGGATCTTGGCCTTGAC--AT--TGTCGATGGTGTCGCTGGACTCGACTTCGAGGGTGAT 174 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || |||||||| || ||||||||||| Sbjct 173 CGTCTTGCCAGTAAGGGTCTTCACGAAGATCTGCAT 138 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| ||| ||| ||||| ||||| ||||| || ||| |||| | || Sbjct 577 AGTACAAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCT 518 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| || |||||||| || ||||||||||| |||| | ||||| || || Sbjct 517 TCCAACTGCTTGCCAGCGAAGATGAGACGTTGCTGGTCAGGCGGAATACCCTCTTTATCC 458 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || ||| || ||| | || | ||| | ||||| || | || |||||| Sbjct 457 TGGATCTTTGCCTTCACGTTGTCGATAGTGTCAGATGATTCGACCTCGAGAGTGATGGTC 398 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || || || || ||||||||||| Sbjct 397 TTGCCGGTAAGCGTTTTCACGAAGATCTGCAT 366 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/217 (70%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||| ||||||| || ||| ||||||||||| |||||||| || | || |||| Sbjct 806 CAGGACGAGGTGAAGAGTCGACTCTTTCTGAATGTTGTAGTCCGACAGAGTTCGTCCATC 747 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| ||||| ||||| || |||||||| || | || | ||||| ||||| Sbjct 746 CTCAAGCTGCTTCCCGGCAAAGATGAGACGTTGCTGATCAGGGGGGATGCCCTCTTTGTC 687 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATT-CATTGGCC---TCGACATCAACGGTTA 34940 | || || ||| || | | |||||| | || | || || || | || | Sbjct 686 CTGGATCTTCGCTTTTAC----GTTGTCGATTGTGTCGGACGATTCAACTTCGAGAGTGA 631 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | ||||| || ||||| || || || || |||||||| Sbjct 630 TTGTCTTCCCGGTGAGAGTTTTGACGAAAATCTGCAT 594 >seq611 Length=5502 Score = 93.3 bits (102), Expect = 3e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 34802 TAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGG 34861 ||||| || || |||| |||| || || ||||| ||||||||||||| || |||||| Sbjct 188 TAGTCAGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGG 247 Query 34862 TCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTG 34921 || | || | ||||||||||| | || || |||||| | |||| || | Sbjct 248 TCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCTTTGACATTGTCGATCGTGTCGCTC 307 Query 34922 GCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | ||||| || | ||| |||||||| |||||||||||||| || Sbjct 308 GATTCGACTTCGAGGGTAATGGTCTTGCCCGTGAGGGTCTTGAC 351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325678899227738