Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tremella_20fuciformis_20[genbank_20GCA_5F000987905.1_202015-05-04]
3,502 sequences; 23,635,607 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq1820 100 2e-16
>seq1820
Length=19797
Score = 100 bits (110), Expect = 2e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643
||||| || || ||||| || ||||| || || | | |||||| || || | ||
Sbjct 568 TGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCCAACTGC 509
Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703
|||||||| | || | | |||||| || ||||||||||||||||| || || | |||
Sbjct 508 TTGCCAGCGAAGATGAGACGTTGCTGGTCAGGCGGAATACCCTCTTTATCCTGGATCTTT 449
Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763
|| || | || | ||||||||| ||| || || ||||| || || ||||| ||
Sbjct 448 GCCTTCACGTTGTCGATAGTGTCAGATGATTCGACCTCGAGAGTGATGGTCTTGCCGGTA 389
Query 29764 AAGGTTTTAACAAATATCTGCAT 29786
| ||||| || || ||||||||
Sbjct 388 AGCGTTTTCACGAAGATCTGCAT 366
Score = 96.9 bits (106), Expect = 3e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
|||||| || | ||||| || || ||||| |||||||| || |||| | || ||
Sbjct 809 ACGCAGGACGAGGTGAAGAGTCGACTCTTTCTGAATGTTGTAGTCCGACAGAGTTCGTCC 750
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || || || || || ||| | || | | ||||||||| || || || ||||||||
Sbjct 749 ATCCTCAAGCTGCTTCCCGGCAAAGATGAGACGTTGCTGATCAGGGGGGATGCCCTCTTT 690
Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
||| || | || ||| || | || | ||||| || ||| ||||| ||||| ||
Sbjct 689 GTCCTGGATCTTCGCTTTTACGTTGTCGATTGTGTCGGACGATTCAACTTCGAGAGTGAT 630
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || || || | ||||| || || ||||||||
Sbjct 629 TGTCTTCCCGGTGAGAGTTTTGACGAAAATCTGCAT 594
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385202758603782
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |