Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tremella_20fuciformis_20[genbank_20GCA_5F000987905.1_202015-05-04] 3,502 sequences; 23,635,607 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1820 140 3e-28 seq3392 136 4e-27 seq467 100 3e-16 seq611 87.8 2e-12 >seq1820 Length=19797 Score = 140 bits (154), Expect = 3e-28 Identities = 152/200 (76%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACG--AGTCCTCGAGCTGCTTG 133520 |||||||||||| || || ||||||||| | ||| ||| ||||||||| |||||| Sbjct 335 GGTGGACTCTTTTTGGATGTTGTAATCG--GAAAGTGTACGGCCGTCCTCGAGTTGCTTG 278 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| | ||||| || |||||||| || |||||||| |||||||| |||||| | Sbjct 277 CCAGCGAAGATGAGACGTTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCC 218 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | || | |||||| ||| ||| || |||| ||||| || ||||| || || Sbjct 217 TTGACATTGTCGATGGTGTCGCTGGACTCGACTTCGAGGGTGATCGTCTTGCCAGTAAGG 158 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || ||||| |||||||| Sbjct 157 GTCTTCACGAAGATCTGCAT 138 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||||||||| || ||||| ||| | ||| ||| || | ||||||||| Sbjct 563 GGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCCAACTGCTTGCC 504 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| || |||||||| || || || || || || || ||||||| ||| Sbjct 503 AGCGAAGATGAGACGTTGCTGGTCAGGCGGAATACCCTCTTTATCCTGGATCTTTGCCTT 444 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||| | | || || |||| |||| ||| |||||||| || || Sbjct 443 CACGTTGTCGATAGTGTCAGATGATTCGACCTCGAGAGTGATGGTCTTGCCGGTAAGCGT 384 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| ||||| |||||||| Sbjct 383 TTTCACGAAGATCTGCAT 366 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| || ||||| || || || | | | ||||| |||||||| || Sbjct 790 GTCGACTCTTTCTGAATGTTGTAGTCCGACAGAGTTCGTCCA-TCCTCAAGCTGCTTCCC 732 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||| || ||||| || || |||||||| || ||||| |||||| || Sbjct 731 GGCAAAGATGAGACGTTGCTGATCAGGGGGGATGCCCTCTTTGTCCTGGATCTTCGCTTT 672 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||||| | || || |||| |||| || || ||||| ||||| Sbjct 671 TACGTTGTCGATTGTGTCGGACGATTCAACTTCGAGAGTGATTGTCTTCCCGGTGAGAGT 612 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| |||||||||||||| Sbjct 611 TTTGACGAAAATCTGCAT 594 >seq3392 Length=91092 Score = 136 bits (150), Expect = 4e-27 Identities = 332/495 (67%), Gaps = 15/495 (3%) Strand=Plus/Plus Query 120363 GACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCATAAACTCGAA 120422 |||||| ||| || ||||| | ||||||| | || || | | ||| || ||||| Sbjct 44207 GACGCGGGACTCGAAGAAGTTGGCCTTGCCCTGGAGAGAGATCATCTCCATGAAGTCGAA 44266 Query 120423 CGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAGTCGGTCCGCTAC 120482 |||||||| |||| || ||| | ||| | |||||||| ||||| || || Sbjct 44267 GGGGTTGCTGACGTTCCAGACCTTCTCGTTGCCGAGAGCGACGAGCAGGCGGTCGGCGAC 44326 Query 120483 AAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCCACCGGCAACGC 120542 ||||| ||||||| ||||||| | || ||||||||| | | || || |||| || Sbjct 44327 GAACTCGATGTACTGGCACATGAGTTTCGAGTTCATGCCGATGAGCGAGACGGGCAGGGC 44386 Query 120543 CGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCT---TGAACATGGCGAGCATAGT 120599 || | ||||||| ||| || | || ||||| ||| | | ||| || Sbjct 44387 GTCAGTAAGGAACTCCTGCTCGATCTTGACGGCCTCGCGGATGATCTTTTCGACG---GT 44443 Query 120600 GTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGT--AGTACAGGCACGCAAAGTCCGTG 120657 | |||| || | || | | | | ||| || |||||| |||||||| ||| Sbjct 44444 CT---CGGG-ATGAGGGCGGCGGCG-GAGGTGGGTGAAGAGCAGGCAAGCAAAGTCGGTG 44498 Query 120658 TGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGATGCCT 120717 || || |||||||| ||||| || ||||||||| || || || |||||||||| ||| Sbjct 44499 TGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTAAGACCGGGCATGAGGCCG 44558 Query 120718 TTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCACGATG 120777 | |||| | |||| |||| || || ||| || ||||| | |||||| ||| Sbjct 44559 CGCTTCTTCAGCCAGAAGATGGACGCGAACGAGCCGGAGAAGAAGATGCCCTCGACGGCA 44618 Query 120778 GCAAAGGCGACCATGCGCTCGGCCAACGTCGC-CGTCTTGCTGTCGATCCACTTCATGGC 120836 || || |||| | ||||||||| || || | || | | || ||||||||| | || Sbjct 44619 GCGAAAGCGATGAGGCGCTCGGCGAAGGTGGATCGGGTGTCCGT-GATCCACTTGAGAGC 44677 Query 120837 CCACTCGGCCTTTTT 120851 |||||||||||| || Sbjct 44678 CCACTCGGCCTTCTT 44692 >seq467 Length=17913 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||||||||||||||| || | || | ||| |||||||| || |||||||| ||||| Sbjct 11020 GTCCTCGAGCTGCTTGCCGGCAAAGATCAACCGTTGCTGGTCAGGGGGGATGCCCTCCTT 10961 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | || | ||||| | || |||||| |||| ||||| Sbjct 10960 GTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACCTCGAGGGTGAT 10901 Query 133625 GGTTTTGCCGGTCAG 133639 ||| || ||||| || Sbjct 10900 GGTCTTCCCGGTAAG 10886 >seq611 Length=5502 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| ||||||||||| ||| | || | ||||||||||| ||||| ||||| |||||| Sbjct 209 TCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTG 268 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| |||| | || | ||||||| | | || || |||| ||| | | Sbjct 269 TCCTGGATCTTGGCTTTGACATTGTCGATCGTGTCGCTCGATTCGACTTCGAGGGTAATG 328 Query 133626 GTTTTGCCGGTCAGAGTTTTTAC 133648 || ||||| || || || || || Sbjct 329 GTCTTGCCCGTGAGGGTCTTGAC 351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483399638254480