Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tremella_20fuciformis_20[genbank_20GCA_5F000987905.1_202015-05-04] 3,502 sequences; 23,635,607 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3392 185 1e-40 seq1542 104 3e-16 seq331 93.3 6e-13 >seq3392 Length=91092 Score = 185 bits (204), Expect = 1e-40 Identities = 208/268 (78%), Gaps = 13/268 (5%) Strand=Plus/Minus Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACC-CGGT 1456073 || |||||||||||||| |||||||| ||||| |||||||||||| |||||||| || Sbjct 44800 GAGAACATCCACTCTGAGACCTACTCACTCCTCATCGACACCTACATCAAGGACAACGAC 44741 Query 1456074 CGA-GAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCG 1456132 || | | || ||||||| ||||||||||| | |||| | | ||| ||||||| Sbjct 44740 CGCCGCA--ACTACCTCTTCGAGGCCATCGACACCATCCCGTGTATCAAGAAGAAGGCCG 44683 Query 1456133 ACTGGGCGATGAAGTGGATCAACAAGGAGGGCC--TCGACACTTTGCCGAGCGGCTCGTC 1456190 | ||||| | |||||||||| ||| || || || ||| |||||||| ||| || Sbjct 44682 AGTGGGCTCTCAAGTGGATCAC---GGACACCCGATCCAC-CTTCGCCGAGCGCCTCATC 44627 Query 1456191 GGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CCATCTTTTGGCT 1456248 | || || || |||||||||||||| ||||| ||| ||| ||| ||||||| ||||| Sbjct 44626 GCTTTCGCTGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTTC-GCGTCCATCTTCTGGCT 44568 Query 1456249 CAAGAAGCGCGGCCTCATGCCCGGTCTT 1456276 ||||||||||||||||||||||||||| Sbjct 44567 GAAGAAGCGCGGCCTCATGCCCGGTCTT 44540 Score = 165 bits (182), Expect = 1e-34 Identities = 195/257 (76%), Gaps = 8/257 (3%) Strand=Plus/Minus Query 1456521 AGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGG 1456580 |||||||| |||||||||| |||||||| | ||||| | | || | ||||| || Sbjct 44433 AGATCATCCGCGAGGCCGTCAAGATCGAGCAGGAGTTCCTTACTGACGCCCTGCCCGTCT 44374 Query 1456581 CGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCG 1456640 ||||||||||||||||| | | ||||||||||||||||| | | || ||||||||||| Sbjct 44373 CGCTCATCGGCATGAACTCGA-AACTCATGTGCCAGTACATCG-AGTTCGTCGCCGACCG 44316 Query 1456641 CCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGC--CAACCCGTTCCCATG 1456698 |||||||| || |||||| | |||||| || | ||| | |||||| ||| | Sbjct 44315 CCTGCTCGTCGCTCTCGGCAAC-GAGAAGGTCT--GGAACGTCAGCAACCCCTTCGACTT 44259 Query 1456699 GATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGTGGC-GAGTA 1456757 |||||| ||||||| ||| |||||||| ||||||| |||||| |||||| | | || Sbjct 44258 CATGGAGATGATCTCTCTCCAGGGCAAGGCCAACTTCTTCGAGTCCCGCGTCTCGGCATA 44199 Query 1456758 CGCCAAGGCCGGCGTCA 1456774 | ||||| | || |||| Sbjct 44198 CTCCAAGTCGGGTGTCA 44182 Score = 86.0 bits (94), Expect = 9e-11 Identities = 108/146 (74%), Gaps = 12/146 (8%) Strand=Plus/Minus Query 1455772 GCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCG 1455831 || ||| ||| | |||||| || ||||| | |||||||| ||||| |||||||| || Sbjct 45132 GCAGATCTGGCAGATGTAC-AAGCAGGCCCAAGCCTCCTTCTGGACATCCGAGGAGATCA 45074 Query 1455832 ACCTCGGCGCCGA----CACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCAT 1455884 |||||| | | || |||| |||||| | ||| | |||| ||||||| || Sbjct 45073 ACCTCGCCCCTGATCTTCACG----ACTGGGAGAACAAGCTTAACGACAACGAGCGATAT 45018 Query 1455885 TTCATCAAGCACGTCCTCGCCTTTTT 1455910 |||||| |||||||||||||||| || Sbjct 45017 TTCATCGAGCACGTCCTCGCCTTCTT 44992 >seq1542 Length=14377 Score = 104 bits (114), Expect = 3e-16 Identities = 290/448 (65%), Gaps = 12/448 (3%) Strand=Plus/Plus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || ||| |||||| || || || ||| |||||| || || |||||||| ||| || Sbjct 6633 GGTGGCAACAAGCGACCCGGTGCTTTCGCCATCTACCTCGAGCCTTGGCACGCAGACATC 6692 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 || ||| || ||||| |||||||||||| || || || || | |||| || Sbjct 6693 TTCGACTTCCTCGACCTGCGAAAGAACCACGGTAA---AGAGGAAGTCC---GCGCTCGT 6746 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967 |||||||| |||| || |||| | |||||| || ||| ||| | | | ||| || Sbjct 6747 GATCTCTTCTACGCACTTTGGATCTCCGACCTCTTCATGAAGCGCGTCGAGTCCGATGGC 6806 Query 261968 GACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGGCC 262027 |||||| | || | ||||| ||||| ||||||||| || ||| | | | | Sbjct 6807 GACTGGACTCTGATGTGCCCCGCCGAGTGCCCCGGCCTGGCTGACTGCCACTCGGATGAC 6866 Query 262028 TTTGACGCCCTCTATGA--GNNNNNNNNNNNNNNNNNNNNNNCGC-GGACCGTCGTGCCC 262084 || || ||||| || | ||| |||| || | Sbjct 6867 TTCGAGAAGCTCTACGAGGGCTACGAGAAGGCCGGCAAGGGTCGCAAGACCATCAAG--- 6923 Query 262085 GCACGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATG 262144 || | || |||||| ||||| ||| |||||| | ||||||||| || | |||| Sbjct 6924 GCTCAGAAGCTCTGGTTCGCCATCCTCGAGGCCCAGACCGAGACCGGTGGACCTTTCATG 6983 Query 262145 GTCTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG 262204 | ||||||||||||| ||||| | |||||||||| |||| ||||| | | | Sbjct 6984 CTGTACAAGGACGCCGCCAACCGCAAGTCCAACCAGCAGCACCTCGGCACAATCAAGTCG 7043 Query 262205 GCCAACCTGTGCACCGAGATCGTCCAGT 262232 ||||||| ||||| |||||| || ||| Sbjct 7044 TCCAACCTCTGCACTGAGATCATCGAGT 7071 Score = 93.3 bits (102), Expect = 6e-13 Identities = 167/239 (70%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 263167 CCGCCCGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCC-CAACCGGGTGACCAT 263225 ||| |||| ||||||||| ||| |||||| || |||||| | | ||| || | | || Sbjct 7788 CCGGCCGAGCTCAAGGCTATCTACAAGACGGTCTGGGAGATCTCGCAAAAGGCCGTC-AT 7846 Query 263226 TGATATGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCT 263285 ||| |||| |||||||| | | || |||| || |||||||||||| | |||| Sbjct 7847 TGACTTGGCCGCCGACCGAGGAGCGTACATCGATCAATCGCAGTCGCTCAACATCCACCT 7906 Query 263286 CGCCGACCCGAC-GGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCC 263344 |||| |||| | | ||| |||| ||||||||| ||| | ||| | || | Sbjct 7907 CGCCAACCCATCATTCTCTCAGC-TCACCTCGATGCACTTCTACGGCTGGAAGAGGGGAC 7965 Query 263345 TCAAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACC 263403 ||||||| || ||||| || |||||| ||| ||||| | || ||||| |||||| Sbjct 7966 TCAAGACCGGTGCTTACTACCTCCGCACCAAGCCTTCTGCCCAAGCTATTCAGTTCACC 8024 >seq331 Length=83702 Score = 93.3 bits (102), Expect = 6e-13 Identities = 108/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 165750 GCAGACCTGGTCACGTGGGGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGC 165809 || ||||| |||| ||||||||| |||| || |||||||||||| ||| | |||||| Sbjct 62562 GCGGACCTCATCACCTGGGGCGCCATCGGCGCACGCACCACCGAGTCGCAGCTACACCGC 62621 Query 165810 GAGATGGCGTC-GGCGCTGCCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCAGCGT 165868 ||| | || || ||||| | || | ||||| |||||||| ||| |||| ||||| || Sbjct 62622 GAGCTCGCCTCGGGCGC-GTCGTTCCCCATCGGCTTCAAGAACGGCACGGACGGTTCGGT 62680 Query 165869 GGCGACGGCCCTCGATGCCGTGC 165891 || |||| |||| ||| ||| Sbjct 62681 GGGCGTGGCCATCGACGCCATGC 62703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177473425663324