Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tremella_20fuciformis_20[genbank_20GCA_5F000987905.1_202015-05-04] 3,502 sequences; 23,635,607 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1820 190 6e-43 seq2861 127 6e-24 seq611 93.3 1e-13 >seq1820 Length=19797 Score = 190 bits (210), Expect = 6e-43 Identities = 183/235 (78%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| |||||||| | | || || || |||||||| |||||||| ||||| || | Sbjct 828 TTTGCATTCCACCACGGAGACGCAGGACGAGGTGAAGAGTCGACTCTTTCTGAATGTTGT 769 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | ||||| ||||| ||||| || || || |||||||| ||||||||||||| Sbjct 768 AGTCCGACAGAGTTCGTCCATCCTCAAGCTGCTTCCCGGCAAAGATGAGACGTTGCTGAT 709 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||| || || || ||||| ||||| || || |||||||| || || || | || || | Sbjct 708 CAGGGGGGATGCCCTCTTTGTCCTGGATCTTCGCTTTTACGTTGTCGATTGTGTCGGACG 649 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||||||| || || | |||||| ||||| || ||||| || ||||||||||| Sbjct 648 ATTCAACTTCGAGAGTGATTGTCTTCCCGGTGAGAGTTTTGACGAAAATCTGCAT 594 Score = 156 bits (172), Expect = 1e-32 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| || || | || || ||||| ||||| || |||||||| || || || || || Sbjct 596 CATACCGCCCCGAAGTCGAAGTACAAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTC 537 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || ||||| | || || ||||| ||||| ||||||||||| ||||| Sbjct 536 GGAGAGGGTGCGGCCGTCTTCCAACTGCTTGCCAGCGAAGATGAGACGTTGCTGGTCAGG 477 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || ||||||||||| || || || || || || || || | ||||||| ||| Sbjct 476 CGGAATACCCTCTTTATCCTGGATCTTTGCCTTCACGTTGTCGATAGTGTCAGATGATTC 417 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| ||||| || ||||| || || |||||||| Sbjct 416 GACCTCGAGAGTGATGGTCTTGCCGGTAAGCGTTTTCACGAAGATCTGCAT 366 Score = 132 bits (146), Expect = 1e-25 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| ||||| || | | || ||||| || || || ||||||||||| || || ||||| Sbjct 368 CATCCCACCGCGGAGACGGAGCACAAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAATC 309 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||| || || || || ||||| || ||||| ||||| ||||||||||| ||||| Sbjct 308 GGAAAGTGTACGGCCGTCCTCGAGTTGCTTGCCAGCGAAGATGAGACGTTGCTGGTCAGG 249 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TT 140685 || || || || || ||||| || || || || ||||| || || | || | ||| | Sbjct 248 CGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTC-GCTGGACT 190 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | ||||| || || | ||||| || || || || || || || |||||||| Sbjct 189 CGACTTCGAGGGTGATCGTCTTGCCAGTAAGGGTCTTCACGAAGATCTGCAT 138 >seq2861 Length=13146 Score = 127 bits (140), Expect = 6e-24 Identities = 506/795 (64%), Gaps = 20/795 (3%) Strand=Plus/Plus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 |||||||| || || || |||||| | | || |||||||| | || || || || | Sbjct 11443 CCCGAAGAGATCTCGTCCATGGTTCTCATCAAGATGAAGGAGACCGCAGAGGCCTACCTC 11502 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 |||| || || || | || || | || || || ||||| || || || | || || Sbjct 11503 GGTGGCACCGTCACCAAGGCCGTCGTCACCGTCCCCGCCTACTTCAACGACTCGCAACGA 11562 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || || || || | ||| || || | | || || | || || || || Sbjct 11563 CAGGCCACCAAGGACGCCGGTACCATCGCCGGTCTCGAGGTGCTCCGTATCATCAACGAG 11622 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 ||||| || || || || || || || || || || | || | || || || || Sbjct 11623 CCCACAGCCGCCGCCATCGCCTACGGTCTCGACAAGAAGACCCAGGGCGAGAAGAACGTT 11682 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 || || || || || |||||||||||||| ||||| || || || || | || ||||| Sbjct 11683 CTCATCTTCGACTTGGGTGGTGGTACTTTCGATGTCTCGCTCCTGACCATCGAGGAGGGC 11742 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 || || || || || || || || ||||| || || | ||||| || || ||||| || Sbjct 11743 ATCTTCGAGGTCAAGGCCACCGCCGGTGACACCCACTTGGGTGGCGAGGACTTTGACAAC 11802 Query 349892 CGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAG-CTAAAATTGATATTGGAGA 349950 |||||||| || ||||| | || || ||||| |||| || | || | Sbjct 11803 CGTCTCGTCAACCACTTTGTCCAGGAGTTCAAGCG-CAAGAACAAGAAGGACCTCTCCAC 11861 Query 349951 TAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATC 350010 || | | || | ||||| || | || || || || ||||| |||||| || | || Sbjct 11862 CAACGCCCGTGCCCTCCGTCGTCTCCGCACCGCTTGCGAGCGTGCCAAGCGTACCCTCTC 11921 Query 350011 ATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTC 350070 || | |||| ||||| || || || || || || ||| || | || |||| | Sbjct 11922 CTCGGCCGCCCAGACCTCGATCGAGATCGACTCGCTCTTTGACGGTATCGACTTCTACAC 11981 Query 350071 ATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGA 350130 || || || ||||| || || || || | || ||| || || | | || ||||| Sbjct 11982 CTCCATCACCCGTGCCCGTTTCGAGGAGCTCTGCCAGGACCTCTTCCGCTCCACCATGGA 12041 Query 350131 TCCTGTGGAAAAAGT--------ATTAAAAGATGCAAAAAT-GTCCAAAAATCAGATTGA 350181 || || || || || | | |||||| | || | |||| || ||||| Sbjct 12042 GCCCGTCGAGAAGGTCCTCCGCGACTCCAAGATGGACAAGTCGTCCGTCAACGAGATT-- 12099 Query 350182 TGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGA 350241 || | || ||||||||||| ||||| || ||| | ||| || | | || || Sbjct 12100 -------GTCCTCGTCGGTGGTTCTACCCGTATCCCCAAAATCCAAAAGATGGTTTCCGA 12152 Query 350242 GTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGG 350301 | || ||| || || || || || || || || ||||| || || || || Sbjct 12153 CATGTTCTCCGGCCGCGAGCCCAACAGGTCCATCAACCCCGACGAAGCCGTCGCTTACGG 12212 Query 350302 TGCTGCTGTTCAGGC 350316 ||| || || ||||| Sbjct 12213 TGCCGCCGTCCAGGC 12227 >seq611 Length=5502 Score = 93.3 bits (102), Expect = 1e-13 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 140562 TAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGA 140621 || ||||| | || || ||||| ||||| || || || || ||||| | || ||||| Sbjct 188 TAGTCAGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGG 247 Query 140622 TCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGAT 140681 ||||||||||| || || || ||||| || || ||||| ||||| || |||| || Sbjct 248 TCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCTTTGACATTGTCGATCGTGTCGCTC 307 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 | ||| ||||| || |||| ||||| || || || || || || Sbjct 308 GATTCGACTTCGAGGGTAATGGTCTTGCCCGTGAGGGTCTTGAC 351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515186411482106