Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tremella_20fuciformis_20[genbank_20GCA_5F000987905.1_202015-05-04] 3,502 sequences; 23,635,607 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1542 223 4e-53 seq1746 123 3e-23 seq587 118 1e-21 seq3359 89.7 6e-13 seq3392 82.4 8e-11 >seq1542 Length=14377 Score = 223 bits (246), Expect = 4e-53 Identities = 330/465 (71%), Gaps = 2/465 (0%) Strand=Plus/Plus Query 53294 CTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAG 53353 || ||||||||||| || || | ||||||||| |||||||| || || ||| Sbjct 6381 CTCTTCAACGCTGGCACACCCAACGCCCAGATGTCGTCTTGCTTCCTCGTCGCCATGCGT 6440 Query 53354 GATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGG 53413 ||||||||||| |||||||||||||| || |||||| || ||||| ||||||||| Sbjct 6441 GATGACTCGATTGACGGCATCTACGACACTCTCAAGACCTGCGCCCAGATCTCCAAGACT 6500 Query 53414 TCGGGTGGTATCGGTATCCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGG 53473 | || ||||||||| | ||| | ||| ||||||| || ||| | || || Sbjct 6501 GCTGGCGGTATCGGTCTGCACATCCACAACATCCGTGCCAAGGGCTCGTACATTGCTGGT 6560 Query 53474 ACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGG 53533 || |||||| | || | || ||||| ||||||||||| | | | | || || || Sbjct 6561 ACCAACGGCTACTCCAACGGTATCGTCCCTATGCTCCGTGCTTACGATGCTACTGCTCGA 6620 Query 53534 TACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGG 53593 ||||| |||||||||| ||||| || | |||||||||||||||||||| ||| Sbjct 6621 TACGTGGACCAGGGTGGCAACAAGCGACCCGGTGCTTTCGCCATCTACCTCGAGCCTTGG 6680 Query 53594 CACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGC 53653 ||||| ||||| | || || ||||| ||||| ||| || ||| | || || | ||| Sbjct 6681 CACGCAGACATCTTCGACTTCCTCGACCTGCGAAAGAACCACGGTAAAGAGGAAGTCCGC 6740 Query 53654 TGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAA 53712 ||||| || || ||| || || ||||| | |||||||||||| | || ||| Sbjct 6741 GCTCGTGATCTCTTCTAC-GCACTTTGGATCTCCGACCTCTTCATGAAGCGCGTCGAGTC 6799 Query 53713 GGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT 53757 || | || ||| ||||||||||| ||||||||||||||| Sbjct 6800 CGATGGCGACTGGACTCTGATGTGCCCCGCCGAGTGCCCCGGCCT 6844 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 55727 CTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGT 55786 ||||||| || ||| |||||| |||||||| | || ||| | |||||| || Sbjct 7797 CTCAAGGCTATCTACAAGACGGTCTGGGAGATCTCGCAAAAGGCCGTCATTGACTTGGCC 7856 Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCT 55846 || || || || ||||||||||| || || ||||| || |||||| | | | || || Sbjct 7857 GCCGACCGAGGAGCGTACATCGATCAATCGCAGTCGCTCAACATCCACCTCGCCAACCCA 7916 Query 55847 TCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGT 55906 ||| | | || | | |||||||||||| ||||| ||||||| |||||||||||| ||| Sbjct 7917 TCATTCTCTCAGCTCACCTCGATGCACTTCTACGGCTGGAAGAGGGGACTCAAGACCGGT 7976 Query 55907 ATGTACTATCTGCGGACC 55924 ||||| || || ||| Sbjct 7977 GCTTACTACCTCCGCACC 7994 >seq1746 Length=12186 Score = 123 bits (136), Expect = 3e-23 Identities = 187/264 (71%), Gaps = 3/264 (1%) Strand=Plus/Plus Query 158958 GTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGTTGGAGCATGAGCCA 159017 ||| ||||| ||||| || | ||||||||||| || || ||| |||||||||||||| Sbjct 10135 GTGGGTCTCCCCAGTAGCCAGGACAAAGTCCTCCGGGGCGTCCTGCTGGAGCATGAGCCA 10194 Query 159018 CATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCATCCATGTTCCCGAG 159077 |||| |||||| ||| || | || || |||||||| ||||||||||| | ||| ||||| Sbjct 10195 CATGCCCTCGATGTAGTCGCGAGCATGTCCCCAGTCACGCTTGGCATCGAGGTTACCGAG 10254 Query 159078 CTCGATG-ACTTTTCCAGACTTTTTCC--ACTCAGCCAGACCGAGCGTGATCTTGCGCGT 159134 | || | | | | | ||| | | ||| || | | ||| |||||| || || Sbjct 10255 GTAGAGGCAGTCTGCGTGACCAGTGGCGATCTCGGCGACGGCTCGCGAGATCTTTCGGGT 10314 Query 159135 CACAAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAACAGAATGCCGGTACAAGCGAA 159194 || || | ||| || || ||||| ||||| |||| ||| ||| | |||||| | Sbjct 10315 GACGAAAGTTCGTCCACGACGAGGAGACTCGTGGTTGAACAAAATACCGTTGCAAGCGTA 10374 Query 159195 CAGGTTATAGGACTCGCGGTAATT 159218 || | |||| ||||||||| || Sbjct 10375 CATGCCGTAGGCCTCGCGGTAGTT 10398 >seq587 Length=43749 Score = 118 bits (130), Expect = 1e-21 Identities = 289/430 (67%), Gaps = 6/430 (1%) Strand=Plus/Plus Query 151874 ATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAA 151933 |||||||||| || || || || ||||||| || | ||| || || | ||| ||| Sbjct 13152 ATCCGGTACCAATACCGTCCGCGCCGTTGATAAGGACCATTGGGACGGTTGGGAGGTAGT 13211 Query 151934 ACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCG 151993 | |||||||| | ||| || || || | | || | || | | || ||| | Sbjct 13212 AATCCGGCTCAATACCTTGCCCATCTTCAACCTGATAGTGCAGCAGAGCATCATCATGAG 13271 Query 151994 GATCGAATATCCGTCGAGTCATAGGACTCAAACGCG-TGAAGATGTATCGGGAGCTGGCC 152052 | | ||| | | ||| ||||| | | | | || |||||||||| || | ||| ||| Sbjct 13272 GGTGGAAGACCGCTCGTGTCATGCG-CGAGATCTCGGTGAAGATGTAACGAGCGCTCGCC 13330 Query 152053 GCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGG 152112 ||||| ||||| ||| | | || || || ||||| || ||| | || | || | | Sbjct 13331 GCATCTTTGCCGCCTCCGATACGGGTACCGAACTGACCGTTGGGTTGAAGCAAATTCACG 13390 Query 152113 TTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGT-GCCCTGCAGA-CTCGCTT 152170 |||||| ||| |||||||| ||||| | | || || || ||| || ||| | || | Sbjct 13391 TTGTTGCTGCCAACGAAATTTTGAGCGAGACCAACGATAGTCGCCGTG-AGAGATTGC-T 13448 Query 152171 CACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGT 152230 | ||||| || ||||| |||| ||| | || |||||||| ||||| || || | || | Sbjct 13449 CGCCGTGATGGTACGCAGTCTTCTCGGAGACATATCCCGCTAACTGTGCGACTCTGATCT 13508 Query 152231 CCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAAC 152290 || |||| |||||| ||||| ||| | | | | || ||||| ||||||| || Sbjct 13509 CCTTCGTGAGGTTCCGCTTGAAACAACCAAAGAGGATTTTTCGCTGACCCGGTTTCAGAC 13568 Query 152291 CGTCCACCAC 152300 |||| |||| Sbjct 13569 CGTCGGCCAC 13578 >seq3359 Length=24196 Score = 89.7 bits (98), Expect = 6e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 74768 GCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTT 74827 ||| ||||| | ||| || | |||||||| || | ||||| |||||||| || | ||| Sbjct 3863 GCCCTCATCGCGGCTGATGAGCTCATTCGAGAAGGTGAGGCCTGGCATAAGACCCCTCTT 3922 Query 74828 CTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAA 74887 ||| | ||| |||||||| ||| || || ||||||||||| || ||||| ||||| Sbjct 3923 CTTGAGCCAGAAGATGGCGGCGAATGACCCGGAAAAGAAGATGCCCTCAACACAGGCAAA 3982 Query 74888 GGCGACAAGGCG 74899 || || ||||| Sbjct 3983 CGCAACGAGGCG 3994 >seq3392 Length=91092 Score = 82.4 bits (90), Expect = 8e-11 Identities = 142/205 (69%), Gaps = 5/205 (2%) Strand=Plus/Plus Query 74790 TCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAG 74849 || || || || | ||| || ||||| || || |||||||||| ||| ||||||| | Sbjct 44526 TCGTTGGAGAAGGTAAGACCGGGCATGAGGCCGCGCTTCTTCAGCCAGAAGATGGACGCG 44585 Query 74850 AAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAAC 74909 || || || |||||||||||| ||||| || || |||| ||||| | ||||| Sbjct 44586 AACGAGCCGGAGAAGAAGATGCCCTCGACGGCAGCGAAAGCGATGAGGCGCTCGGCGAA- 44644 Query 74910 GGTGCATCGGAAGTC----ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGG 74965 |||| ||||| ||| ||||| | ||||||| || || || |||| || Sbjct 44645 GGTGGATCGGGTGTCCGTGATCCACTTGAGAGCCCACTCGGCCTTCTTCTTGATACACGG 44704 Query 74966 GACAGTATCGATCGCTTGGAAGAGG 74990 || || ||||| || | ||||||| Sbjct 44705 GATGGTGTCGATGGCCTCGAAGAGG 44729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547192045619600