Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tremella_20fuciformis_20[genbank_20GCA_5F000987905.1_202015-05-04] 3,502 sequences; 23,635,607 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1542 235 6e-57 seq1820 167 3e-36 seq611 107 2e-18 seq467 100 3e-16 seq3359 93.3 5e-14 seq587 84.2 2e-11 >seq1542 Length=14377 Score = 235 bits (260), Expect = 6e-57 Identities = 668/1016 (66%), Gaps = 23/1016 (2%) Strand=Plus/Minus Query 80537 GACCCCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGT 80596 ||||||| | ||| ||||| |||||| || ||||| ||| || | | ||| | Sbjct 7488 GACCCCAAAGGTCAAACTGCAGCTTGCCCTGAGAGATGGGAGAGCCCTCGTATGACTCAT 7429 Query 80597 ACGGGCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACT 80656 | |||| | || ||||||||| |||||| || || || || || || ||| || Sbjct 7428 ATCTCCCCTGCTCCTGGGCCAGCTCGCACGACGCCTCGAGCGCGGCATGGTAGATGGTCT 7369 Query 80657 CAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCA 80716 | |||| |||| | |||| || || |||||| | || || | || Sbjct 7368 CGAAGATCTGGATGTTGAGCTCGCGGGCGGCGGGCGAGTCGAATGGCATGCGAAGAGCCA 7309 Query 80717 TGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA-T 80775 ||||| | || || || |||||||| |||| ||| ||| ||||| || ||| || | Sbjct 7308 TGAACGCATCGGCGAGACCCTGAACACCGAGACCGACCGGTCGGTGTCGGAAGTTGGAGT 7249 Query 80776 CGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTA 80835 || | | || |||| ||||| | || ||||||| || ||||| ||| Sbjct 7248 TGCGAG-CTTCAGGAACAGGGTAGTAATTGCGCGAGATGACGGTGTCAAGGTTCTTGGTA 7190 Query 80836 ACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAA---TTGGTTCCCCTTC---ACA 80889 || ||| || | || || || |||| |||||| | | || | || | || Sbjct 7189 ACGACCTTGGTGATCTCGTGCAGCTTCTTGAAGTCGTAGACTCGGCGCTCCATGTCGACG 7130 Query 80890 AATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAAC 80949 ||||| || ||| || || || || ||||| ||||| || || || | | | | || Sbjct 7129 AATGCTGGCAGGGCGAGCGAGGCGAGGTTGCAAACGGCGACTTCATCGGGAGCAGAGTAC 7070 Query 80950 TCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGAC 81009 |||| ||| || ||||| | || || ||||| ||||| || |||| | |||||| ||| Sbjct 7069 TCGATGATCTCAGTGCAGAGGTTGGACGACTTGATTGTGCCGAGGTGCTGCTGGTTGGAC 7010 Query 81010 TTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTG 81069 ||| |||| ||||||||||| |||| | || |||||||||| ||| | || | Sbjct 7009 TTGCGGTTGGCGGCGTCCTTGTACAGCATGAAAGGTCCACCGGTCTCGGTCTGGGCCTCG 6950 Query 81070 AGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACA 81129 ||||||||| ||| | || | ||||||| |||||| ||||| | | | Sbjct 6949 AGGATGGCGAACCAGAGCTTCTGAGCCTTGATGGTCTTGCGACCCTTGCCGGCCTTCTCG 6890 Query 81130 TACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTC 81188 || |||| |||||| ||||| | | ||| |||| ||| | |||||||| Sbjct 6889 TAGCCCTCGTAGAGCTTC-TCGAAGTCATCCGAGTGGCAGTCAGCCAGGCCGGGGCACTC 6831 Query 81189 GTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGG 81248 | ||||||||||| ||||||| ||| ||| || ||||||||| ||| | Sbjct 6830 GGCGGGGCACATCAGAGTCCAGTCGCCATCGGACTCGACGCGCTTCATGAAGAGGTCGGA 6771 Query 81249 GATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCG--CCTCCTCATCACCCTGGTTGAGG 81306 |||||| || ||| ||| || || || |||||| | ||||| | ||| ||||| Sbjct 6770 GATCCAAAGTGCGTAGAAGAGATCACG--AGCGCGGACTTCCTCTTTACCGTGGTTCTTT 6713 Query 81307 CGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-A 81365 |||| ||||| ||||| | |||||| || ||||| ||||| || || | ||||| | | Sbjct 6712 CGCAGGTCGAGGAAGTCGAAGATGTCTGCGTGCCAAGGCTCGAGGTAGATGGCGAAAGCA 6653 Query 81366 C-----CCCTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGC 81420 | | |||| ||||||||||| ||||| || ||||| || | | |||| Sbjct 6652 CCGGGTCGCTTG---TTGCCACCCTGGTCCACGTATCGAGCAGTAGCATCGTAAGCACGG 6596 Query 81421 AACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCG 81480 | |||||||| |||||| | || | ||||| ||||| | || ||| |||||||| Sbjct 6595 AGCATAGGGACGATACCGTTGGAGTAGCCGTTGGTACCAGCAATGTACGAGCCCTTGGCA 6536 Query 81481 CGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACA 81536 || | ||| ||| |||||||| || || | ||| || ||||| || || Sbjct 6535 CGGATGTTGTGGATGTGCAGACCGATACCGCCAGCAGTCTTGGAGATCTGGGCGCA 6480 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || || || ||||| || |||||||| ||| ||||||||||||| | |||||| || Sbjct 7993 GTGCGGAGGTAGTAAGCACCGGTCTTGAGTCCCCTCTTCCAGCCGTAGAAGTGCATCGAG 7934 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 |||||| | | || ||||| | | | |||||| || ||||| || ||| |||| Sbjct 7933 GTGAGCTGAGAGAATGATGGGTTGGCGAGGTGGATGTTGAGCGACTGCGATTGATCGATG 7874 Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGT 80216 | || || || || || |||| ||||| | | |||||| | || ||||| || || Sbjct 7873 TACGCTCCTCGGTCGGCGGCCAAGTCAATGACGGCCTTTTGCGAGATCTCCCAGACCGT 7815 >seq1820 Length=19797 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| ||||| |||||||| || || || || || ||||| | Sbjct 138 ATGCAGATCTTCGTGAAGACCCTTACTGGCAAGACGATCACCCTCGAAGTCGAGTCCAGC 197 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || |||||||||||||| || || || |||||| Sbjct 198 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 257 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || || ||||| |||||||||||||| | ||||| || | || || || Sbjct 258 CAACGTCTCATCTTCGCTGGCAAGCAACTCGAGGACGGCCGTACACTTTCCGATTACAAC 317 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| || ||||| || || || || | ||||| |||||||| Sbjct 318 ATCCAAAAAGAGTCCACCCTCCACCTTGTGCTCCGTCTCCGCGGTGG 364 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || || ||||||||||||||||| || ||||| ||||| || ||| | Sbjct 366 ATGCAGATCTTCGTGAAAACGCTTACCGGCAAGACCATCACTCTCGAGGTCGAATCATCT 425 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || || ||||| || ||||| ||||| || |||||| Sbjct 426 GACACTATCGACAACGTGAAGGCAAAGATCCAGGATAAAGAGGGTATTCCGCCTGACCAG 485 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || || ||||| ||||| | || || | || ||||| | ||||| || Sbjct 486 CAACGTCTCATCTTCGCTGGCAAGCAGTTGGAAGACGGCCGCACCCTCTCCGACTACAAC 545 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || || || ||||| || || | || ||||| || || Sbjct 546 ATCCAGAAAGAGTCGACCCTTCACCTTGTACTTCGACTTCGGGGCGG 592 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 27504 GGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGA 27563 |||||| ||||| || ||||||||||| | || || || || ||||| |||||||||| Sbjct 967 GGAGGGCATTCCCCCGGACCAGCAGCGATTGATCTTCGCCGGCAAGCAGCTCGAGGATGG 1026 Query 27564 TCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTC 27622 || || || ||| ||||| || |||| ||||| || || ||||| | || | |||| Sbjct 1027 CCGCACTCTGAGC-GACTACAACATCCAGAAGGAGTCTACACTTCACTTGGTGCTCCGTC 1085 Query 27623 TTCGCGGTGGACAA 27636 | || ||||| ||| Sbjct 1086 TGCGTGGTGGTCAA 1099 >seq611 Length=5502 Score = 107 bits (118), Expect = 2e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || || |||||||| ||||| || || || || || | || | || | Sbjct 351 GTCAAGACCCTCACGGGCAAGACCATTACCCTCGAAGTCGAATCGAGCGACACGATCGAC 292 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | || || || || |||||||||||||| |||||||| ||||||||||| | || Sbjct 291 AATGTCAAAGCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGCTTGATC 232 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 || || || ||||| || ||||||| || || || | ||||| Sbjct 231 TTCGCCGGCAAGCAGCTTGAGGATGGCCGCACTCTCTCTGACTA 188 >seq467 Length=17913 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 |||||||| ||||| || || || ||||| ||||| || | ||| | || | ||| Sbjct 10886 CTTACCGGGAAGACCATCACCCTCGAGGTGGAGTCCTCGGACACCATCGACAACGTCAAG 10945 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || || |||||||||||||| || || || |||||||| || | || ||||| || Sbjct 10946 GCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAACGGTTGATCTTTGCCGGC 11005 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 ||||| |||||||| | || ||||| | ||||| Sbjct 11006 AAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTA 11040 >seq3359 Length=24196 Score = 93.3 bits (102), Expect = 5e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 64717 CGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATT 64776 || |||| || ||||||||||| || || || |||||||| ||||||||| | || Sbjct 3994 CGCCTCGTTGCGTTTGCCTGTGTTGAGGGCATCTTCTTTTCCGGGTCATTCGCCGCCATC 3935 Query 64777 TTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCT 64836 |||||||| || ||| |||| || |||||||| || | || ||||| ||||| ||| Sbjct 3934 TTCTGGCTCAAGAAGAGGGGTCTTATGCCAGGCCTCACCTTCTCGAATGAGCTCATCAGC 3875 Query 64837 CGGGACGAGGG 64847 || || ||||| Sbjct 3874 CGCGATGAGGG 3864 >seq587 Length=43749 Score = 84.2 bits (92), Expect = 2e-11 Identities = 155/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 32027 TCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGC 32086 ||||| |||||| ||| || || | || || ||| | |||| || || | ||| Sbjct 13529 TCAAGCGGAACCTCACGAAGGAGATCAGAGTCGCACAGTTAGCGGGATATGTCTCCGAGA 13470 Query 32087 AAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGA 32146 | || || || || ||||||||| || ||| || || || || || ||||| | Sbjct 13469 AGACTGCGTACCATCACGGCGAGCAATCTCTCACGGCGACTATCGTTGGTCTCGCTCAAA 13410 Query 32147 ACTTTGTCGGTGCAAATAACCTGAACTTACT-CGAGCCATCTGGACAGTTTGGGACCCGG 32205 | || || || || ||| |||| || || | | ||| | || ||||| || ||||| Sbjct 13409 ATTTCGTTGGCAGCAACAACGTGAATTTGCTTCAACCCAAC-GGTCAGTTCGGTACCCGT 13351 Query 32206 CTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACC 32250 ||| || ||||| ||||| |||||| | ||||||||||||||| Sbjct 13350 ATCGGAGGCGGCAAAGATGCGGCGAGCGCTCGTTACATCTTCACC 13306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570285434662240