Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tremella_20fuciformis_20[genbank_20GCA_5F000987905.1_202015-05-04] 3,502 sequences; 23,635,607 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1820 104 1e-17 >seq1820 Length=19797 Score = 104 bits (114), Expect = 1e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||| | ||||| ||| ||| ||||| ||||| ||||| |||||||| || Sbjct 355 AGACGGAGCACAAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAATCGGAAAGTGTACGG 296 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || ||||| || || || || || | ||| || ||||| ||||| | |||||| Sbjct 295 CCGTCCTCGAGTTGCTTGCCAGCGAAGATGAGACGTTGCTGGTCAGGCGGGATGCCCTCC 236 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || || | || ||||| | ||| ||||| | ||| Sbjct 235 TTGTCCTGGATC-TTGGCCTTGACATTGTCGATGGTGTCGCTGGACTCGACTTCGAGGGT 177 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || | || ||||| || |||||||| Sbjct 176 GATCGTCTTGCCAGTAAGGGTCTTCACGAAGATCTGCAT 138 Score = 89.7 bits (98), Expect = 3e-13 Identities = 155/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| || | || ||||| ||| || |||||||| || || || || ||||| Sbjct 811 AGACGCAGGACGAGGTGAAGAGTCGACTCTTTCTGAATGTTGTAGTCCGACAGAGTTCGT 752 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| || || |||||||| || | ||| || || || || || | ||||| Sbjct 751 CCATCCTCAAGCTGCTTCCCGGCAAAGATGAGACGTTGCTGATCAGGGGGGATGCCCTCT 692 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTT-CGCTCTCCACTTCCACGG 34666 ||||| |||||| ||||| || | |||||||| || | || ||||| | | Sbjct 691 TTGTCCTGGATCTTCGCTTTTA-CGTTGTCGATTGTGTCGGACGAT-TCAACTTCGAGAG 634 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || || ||||| | ||||| || ||||||||||| Sbjct 633 TGATTGTCTTCCCGGTGAGAGTTTTGACGAAAATCTGCAT 594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314716167143966