Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tremella_20fuciformis_20[genbank_20GCA_5F000987905.1_202015-05-04] 3,502 sequences; 23,635,607 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1820 196 1e-44 seq611 125 2e-23 seq467 118 2e-21 >seq1820 Length=19797 Score = 196 bits (216), Expect = 1e-44 Identities = 176/221 (80%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||||| || ||||||||||| || |||||||| |||||||| || || | ||||| Sbjct 586 CGAAGTCGAAGTACAAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTG 527 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || ||||||| ||||||||| |||||||| || ||||| |||||||| |||| || Sbjct 526 CGGCCGTCTTCCAACTGCTTGCCAGCGAAGATGAGACGTTGCTGGTCAGGCGGAATACCC 467 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || || |||||||||||| |||||||| ||||| |||||||| ||| ||||||||| Sbjct 466 TCTTTATCCTGGATCTTTGCCTTCACGTTGTCGATAGTGTCAGATGATTCGACCTCGAGA 407 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || || || || || || || | |||||| Sbjct 406 GTGATGGTCTTGCCGGTAAGCGTTTTCACGAAGATCTGCAT 366 Score = 179 bits (198), Expect = 9e-40 Identities = 167/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||||||||| |||||||| || ||||| || |||| || || | |||||| Sbjct 805 AGGACGAGGTGAAGAGTCGACTCTTTCTGAATGTTGTAGTCCGACAGAGTTCGTCCATCC 746 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || || ||||| || ||||| || ||||| || | || || |||||| Sbjct 745 TCAAGCTGCTTCCCGGCAAAGATGAGACGTTGCTGATCAGGGGGGATGCCCTCTTTGTCC 686 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||| ||||| ||||| ||||| || |||||| ||||||||||| ||| Sbjct 685 TGGATCTTCGCTTTTACGTTGTCGATTGTGTCGGACGATTCAACTTCGAGAGTGATTGTC 626 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || |||||||| || || || | |||||| Sbjct 625 TTCCCGGTGAGAGTTTTGACGAAAATCTGCAT 594 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| || |||||||||||||||||||| ||||| | ||| || | || || Sbjct 349 AGCACAAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAATCGGAAAGTGTACGGCCGTCC 290 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || |||||||| |||||||| || ||||| |||||||| || | || ||||||||| Sbjct 289 TCGAGTTGCTTGCCAGCGAAGATGAGACGTTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 230 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| | || || ||||| ||||||||| Sbjct 229 TGGATCTTGGCCTTGACATTGTCGATGGTGTCGCTGGACTCGACTTCGAGGGTGATCGTC 170 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 169 TTGCCAGTAAGGGTCTTCACGAAGATCTGCAT 138 >seq611 Length=5502 Score = 125 bits (138), Expect = 2e-23 Identities = 118/149 (79%), Gaps = 6/149 (4%) Strand=Plus/Plus Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 ||||| || ||||||||||| |||||||| | ||| || ||||||||||||| || ||| Sbjct 206 CCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCC 265 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGA 211073 |||||||||||||| ||| || || ||||| ||||| ||| ||| || ||||| Sbjct 266 TTGTCCTGGATCTTGGCTTTGACATTGTCGATCGTGTC---GCTCGATTCGACTTCGAGG 322 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102 || || ||||| |||||||| ||||| || Sbjct 323 GTAATGGTCTTGCCCGTGAGGGTCTTGAC 351 >seq467 Length=17913 Score = 118 bits (130), Expect = 2e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 210939 TAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGG 210998 || |||| ||||| | || || || ||||||||||| || ||||| | ||||| ||| Sbjct 11040 TAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAACCGTTGCTGG 10981 Query 210999 TCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058 ||||| || | || ||||||||||||||||| || ||||| ||||||||||| ||| Sbjct 10980 TCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAG 10921 Query 211059 CTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAG 211093 || |||||||| ||||| ||||| || || || Sbjct 10920 GACTCCACCTCGAGGGTGATGGTCTTCCCGGTAAG 10886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159099989574230