Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tremella_20fuciformis_20[genbank_20GCA_5F000987905.1_202015-05-04] 3,502 sequences; 23,635,607 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1820 116 3e-21 >seq1820 Length=19797 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| ||||| ||||| || || || ||||||||||||||||| || | Sbjct 594 ATGCAGATTTTCGTCAAAACTCTCACCGGGAAGACAATCACTCTCGAAGTTGAATCGTCC 653 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | ||||| || || |||||||| || | || || ||||| Sbjct 654 GACACAATCGACAACGTAAAAGCGAAGATCCAGGACAAAGAGGGCATCCCCCCTGATCAG 713 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || |||||||| || || || || || | ||| ||| | || |||||| Sbjct 714 CAACGTCTCATCTTTGCCGGGAAGCAGCTTGAGGATGGACGAACTCTGTCGGACTACAAC 773 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 774 ATTCAGAAAGAGTCGAC 790 Score = 114 bits (126), Expect = 9e-21 Identities = 148/200 (74%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || |||||||| |||||||| || |||| Sbjct 138 ATGCAGATCTTCGTGAAGACCCTTACTGGCAAGACGATCACCCTCGAAGTCGAGTCCAGC 197 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | ||||| || || | ||||| || || Sbjct 198 GACACCATCGACAATGTCAAGGCCAAGA-TCCAGGACAAGGAGGGCATCCCGCCTGACCA 256 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTAC 23787 || ||| | || || || ||||| ||||| || |||| || |||||| ||||||| Sbjct 257 GCAACGTCTCATCTTCGCTGGCAAGCAACTCGAGGACGGCCGTACACTTTC--CGATTAC 314 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| |||||||||||||| Sbjct 315 AACATCCAAAAAGAGTCCAC 334 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||| || || || || || ||||||||||| || || || | Sbjct 366 ATGCAGATCTTCGTGAAAACGCTTACCGGCAAGACCATCACTCTCGAGGTCGAATCATCT 425 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | || | | || ||| || || ||||| ||| | ||||| || || Sbjct 426 GACACTATCGACAACGTGAAGGCAAAGATCCAGGATAAAGAGGGTATTCCGCCTGACCAG 485 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || || || ||||| || ||||||||| ||||| | ||| |||||| Sbjct 486 CAACGTCTCATCTTCGCTGGCAAGCAGTTGGAAGACGGCCGCACCCTCTCCGACTACAAC 545 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 546 ATCCAGAAAGAGTCGAC 562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337995173539016