Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tremella_20fuciformis_20[genbank_20GCA_5F000987905.1_202015-05-04] 3,502 sequences; 23,635,607 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1820 150 4e-31 seq467 89.7 1e-12 seq611 86.0 1e-11 >seq1820 Length=19797 Score = 150 bits (166), Expect = 4e-31 Identities = 166/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||||| || |||||||| || || || ||||| |||| ||||| |||| | || Sbjct 586 CGAAGTCGAAGTACAAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTG 527 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || ||||| | |||||| ||||||||||| || ||||| ||||| ||||||||||| Sbjct 526 CGGCCGTCTTCCAACTGCTTGCCAGCGAAGATGAGACGTTGCTGGTCAGGCGGAATACCC 467 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || || || ||||||||| |||||| ||||| ||||| || | ||| || || | Sbjct 466 TCTTTATCCTGGATCTTTGCCTTCACGTTGTCGATAGTGTCAGATGATTCGACCTCGAGA 407 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| || | ||||| | ||| | ||||| Sbjct 406 GTGATGGTCTTGCCGGTAAGCGTTTTCACGAAGATCTGCAT 366 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||||||||| ||||| |||||||||| |||||||||| | || | || || Sbjct 349 AGCACAAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAATCGGAAAGTGTACGGCCGTCC 290 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| ||||||||||| || ||||| ||||| ||||| || || |||||||| Sbjct 289 TCGAGTTGCTTGCCAGCGAAGATGAGACGTTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 230 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| ||||||||||| || || || || | ||||||||| Sbjct 229 TGGATCTTGGCCTTGACATTGTCGATGGTGTCGCTGGACTCGACTTCGAGGGTGATCGTC 170 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | || || | ||| | ||||| Sbjct 169 TTGCCAGTAAGGGTCTTCACGAAGATCTGCAT 138 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | |||||| ||||| ||||| || ||||| || | ||||| || | || ||| Sbjct 815 ACGGAGACGCAGGACGAGGTGAAGAGTCGACTCTTTCTGAATGTTGTAGTCCGACAGAGT 756 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || ||||| || ||||||||||| || ||||| || ||||| || || || || || || Sbjct 755 TCGTCCATCCTCAAGCTGCTTCCCGGCAAAGATGAGACGTTGCTGATCAGGGGGGATGCC 696 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || ||||| |||||||| || || ||||| ||||| || | ||| || || | Sbjct 695 CTCTTTGTCCTGGATCTTCGCTTTTACGTTGTCGATTGTGTCGGACGATTCAACTTCGAG 636 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || || | |||||| | ||| | ||||| Sbjct 635 AGTGATTGTCTTCCCGGTGAGAGTTTTGACGAAAATCTGCAT 594 >seq467 Length=17913 Score = 89.7 bits (98), Expect = 1e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || |||||||| || || ||||| | ||||| ||||| || || || || ||| Sbjct 11022 CCGTCCTCGAGCTGCTTGCCGGCAAAGATCAACCGTTGCTGGTCAGGGGGGATGCCCTCC 10963 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| |||||||| ||| || ||||||||||| |||| ||||| || | ||| Sbjct 10962 TTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACCTCGAGGGTG 10903 Query 225676 ATCGTCTTGCCCGT 225689 || ||||| || || Sbjct 10902 ATGGTCTTCCCGGT 10889 >seq611 Length=5502 Score = 86.0 bits (94), Expect = 1e-11 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 225533 CATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTT 225592 || |||| || | | ||| | ||||| || |||||||| || |||||||| | || | Sbjct 183 CACTGTAGTCAGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCT 242 Query 225593 GTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGT 225652 | ||||| || ||||| || |||||||| |||||||| || ||| ||||| |||| Sbjct 243 GCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCTTTGACATTGTCGATCGTGT 302 Query 225653 CTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 | | ||| || || | || || ||||||||||| Sbjct 303 CGCTCGATTCGACTTCGAGGGTAATGGTCTTGCCCGT 339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192477691870388