Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tremella_20fuciformis_20[genbank_20GCA_5F000987905.1_202015-05-04] 3,502 sequences; 23,635,607 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1820 179 8e-40 seq611 141 2e-28 seq467 134 3e-26 seq3359 114 3e-20 seq3392 91.5 3e-13 >seq1820 Length=19797 Score = 179 bits (198), Expect = 8e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || || || || | || ||||| || ||||||||||| | Sbjct 820 CCACCACGGAGACGCAGGACGAGGTGAAGAGTCGACTCTTTCTGAATGTTGTAGTCCGAC 761 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || |||||||| || || |||||||||||||| | |||||| || ||| || Sbjct 760 AGAGTTCGTCCATCCTCAAGCTGCTTCCCGGCAAAGATGAGACGTTGCTGATCAGGGGGG 701 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||| ||||| |||||||| ||||||||| | ||||| ||||| || | ||| ||| Sbjct 700 ATGCCCTCTTTGTCCTGGATCTTCGCTTTTACGTTGTCGATTGTGTCGGACGATTCAACT 641 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||||| ||||| || || | ||| || ||||| |||||||| Sbjct 640 TCGAGAGTGATTGTCTTCCCGGTGAGAGTTTTGACGAAAATCTGCAT 594 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || || || |||||||| || || | || ||||| |||||||||||||| | Sbjct 593 ACCGCCCCGAAGTCGAAGTACAAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGGA 534 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| || || | || || || || ||||| | |||||| |||||| ||| Sbjct 533 GAGGGTGCGGCCGTCTTCCAACTGCTTGCCAGCGAAGATGAGACGTTGCTGGTCAGGCGG 474 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||| || || ||||||||||| || ||| | ||||||||||| || | |||||| Sbjct 473 AATACCCTCTTTATCCTGGATCTTTGCCTTCACGTTGTCGATAGTGTCAGATGATTCGAC 414 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||||| ||||| || || | || || ||||| |||||||| Sbjct 413 CTCGAGAGTGATGGTCTTGCCGGTAAGCGTTTTCACGAAGATCTGCAT 366 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || || || || || || || | ||| ||||||||||||||||| || | | Sbjct 364 CCACCGCGGAGACGGAGCACAAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAATCGGAA 305 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||| ||||| ||||| || || || ||||| | |||||| |||||| ||| Sbjct 304 AGTGTACGGCCGTCCTCGAGTTGCTTGCCAGCGAAGATGAGACGTTGCTGGTCAGGCGGG 245 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || || | ||||| ||||| | |||||| Sbjct 244 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGCTGGACTCGACT 185 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||||||||| || || | ||||| ||||| |||||||| Sbjct 184 TCGAGGGTGATCGTCTTGCCAGTAAGGGTCTTCACGAAGATCTGCAT 138 Score = 100 bits (110), Expect = 6e-16 Identities = 82/100 (82%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 283001 CTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGT 283060 |||||| |||||||| || || || | ||||| |||||||||| || ||||||||||| Sbjct 920 CTTGTCCTGGATCTTCGCCTTGACATTGTCGATCGTGTCCGAAGACTCCACTTCGAGAGT 861 Query 283061 GATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || ||||| |||||||| ||||| ||||| || |||||| Sbjct 860 AATGGTCTTCCCCGTCAACGTCTTGACGAAGATTTGCATT 821 Score = 91.5 bits (100), Expect = 3e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || |||| || | || || || |||||||||||||| Sbjct 1096 ACCACCACGCAGACGGAGCACCAAGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCT 1037 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || ||||| |||||||| || || ||||| || Sbjct 1036 CAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCCGGGGG 977 Query 282992 AATACCCTCC 283001 ||| |||||| Sbjct 976 AATGCCCTCC 967 >seq611 Length=5502 Score = 141 bits (156), Expect = 2e-28 Identities = 131/166 (79%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 282922 TGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTT 282981 ||||||||| || |||||||||||||| || || || ||||| |||||||| || || | Sbjct 186 TGTAGTCAGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCT 245 Query 282982 GGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCG 283041 ||||| ||||| ||||||||||| |||||||| ||||| || | ||||| ||||| Sbjct 246 GGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCTTTGACATTGTCGATCGTGTCGC 305 Query 283042 AAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 | |||||||||||| || || ||||| ||||| | ||||| || Sbjct 306 TCGATTCGACTTCGAGGGTAATGGTCTTGCCCGTGAGGGTCTTGAC 351 >seq467 Length=17913 Score = 134 bits (148), Expect = 3e-26 Identities = 122/154 (79%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 282922 TGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTT 282981 ||||||| | || |||||||| ||||| || || || |||||||||||||| ||||| | Sbjct 11042 TGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAACCGTTGCT 10983 Query 282982 GGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCG 283041 ||||| || || ||||||||||| |||||||| || || ||| | ||||| ||||||| Sbjct 10982 GGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCG 10923 Query 283042 AAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 | | || || ||||| ||||| ||||| || || Sbjct 10922 AGGACTCCACCTCGAGGGTGATGGTCTTCCCGGT 10889 >seq3359 Length=24196 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 230160 CAAATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGC 230219 || ||||| | || | || |||| || ||||||||| | ||||||| | |||||| Sbjct 3793 CACATCGTTTCCGAGGCGGTCGCAATCGAGAAGGAGTTCCTGATCGACGCTTTGCCTTGC 3734 Query 230220 CGTCTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGT 230279 | || || ||||| || ||| |||||||| |||||| ||||| || || || ||||| Sbjct 3733 CAGCTCATTGGCATAAACGCTCATCTCATGTCGCAATACATCGAGTTTGTTGCGGATCGC 3674 Query 230280 ATTTTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATG 230339 | ||| | |||| || | | ||| | || ||| | | || || |||| || ||| Sbjct 3673 TTGGTCGAGTCGCTGGGATGCCCCAAAATATACAACACGACAAATCCTTTCGATTGGATG 3614 Query 230340 GAGCTCATTTCACTCCAGGGGAAAACTAACTTCTTCGA 230377 |||||||| || ||||| || || | ||||||||||| Sbjct 3613 GAGCTCATATCCCTCCAAGGCAAGGCAAACTTCTTCGA 3576 >seq3392 Length=91092 Score = 91.5 bits (100), Expect = 3e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282 || ||||||||||| | | |||||| | || || ||||| ||||| || || || | Sbjct 44371 CTCATCGGCATGAACTCGAAACTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTG 44312 Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342 |||| || || || ||||||| || | ||| || |||||||||| || |||||| Sbjct 44311 CTCGTCGCTCTCGGCAACGAGAAGGTCTGGAACGTCAGCAACCCCTTCGACTTCATGGAG 44252 Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGA 230377 | || || |||||||| || | ||||||||||| Sbjct 44251 ATGATCTCTCTCCAGGGCAAGGCCAACTTCTTCGA 44217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046692233466308