Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tremella_20fuciformis_20[genbank_20GCA_5F000987905.1_202015-05-04] 3,502 sequences; 23,635,607 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1820 125 5e-24 seq611 89.7 4e-13 seq467 82.4 5e-11 >seq1820 Length=19797 Score = 125 bits (138), Expect = 5e-24 Identities = 156/212 (74%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| ||||| || ||| ||| ||||||||||||||||||| ||| || |||| || Sbjct 347 CACAAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAATCGGAAAGTGTACGGCCGTCCTC 288 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || ||||| || || ||||| | ||| ||||| || | || | || ||||| ||| Sbjct 287 GAGTTGCTTGCCAGCGAAGATGAGACGTTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 228 Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| ||| || ||| | ||||||||| ||| || || || | || |||||| Sbjct 227 GATCTTGGCCTTGACATTGT--CGATGGTGTCGCTGGACTCGACTTCGAGGGTGATCGTC 170 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || ||||||||||||||||| ||||| Sbjct 169 TTGCCAGTAAGGGTCTTCACGAAGATCTGCAT 138 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| || ||| || ||||||||||| |||| ||| ||| |||| ||| Sbjct 574 ACAAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCC 515 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | |||||| || || ||||| | ||| ||||| || | || | ||| || || ||| Sbjct 514 AACTGCTTGCCAGCGAAGATGAGACGTTGCTGGTCAGGCGGAATACCCTCTTTATCCTGG 455 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||||| | | || ||||| | ||||| ||||| | || || ||||| Sbjct 454 ATCTTTGCCTTCACGTTGTCGATAGTGTCAGATGATTCGACCTCGAGAGTGATGGTCTTG 395 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || || ||||||||||| ||||| Sbjct 394 CCGGTAAGCGTTTTCACGAAGATCTGCAT 366 Score = 109 bits (120), Expect = 4e-19 Identities = 169/237 (71%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| || | || | || || |||||||| || ||| || || |||||||| Sbjct 827 TTGCATTCCACCACGGAGACGCAGGACGAGGTGAAGAGTCGACTCTTTCTGAATGTTGTA 768 Query 44164 ATCGGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 || | ||||| || | || || |||||||||||||||||||| | ||| |||||| Sbjct 767 GTCCGACAGAGTT--CGTCCATCCTCAAGCTGCTTCCCGGCAAAGATGAGACGTTGCTGA 710 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGC 44280 || | || | || || || ||| |||||| |||| | ||| | || ||||||| Sbjct 709 TCAGGGGGGATGCCCTCTTTGTCCTGGATCTTC-GCTTTTACGTTGTCGATTGTGTCGGA 651 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || || | || || ||||| || ||||| || || ||||| || ||||| Sbjct 650 CGATTCAACTTCGAGAGTGATTGTCTTCCCGGTGAGAGTTTTGACGAAAATCTGCAT 594 >seq611 Length=5502 Score = 89.7 bits (98), Expect = 4e-13 Identities = 123/169 (73%), Gaps = 6/169 (4%) Strand=Plus/Plus Query 44160 TGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCT 44219 |||| || | ||| ||| | || || |||||||| ||||| |||||||| ||||||| Sbjct 186 TGTAGTCAGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCT 245 Query 44220 GATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT---CAATGTTCCTATGGTGT 44276 | || | ||| | || ||||| ||| ||||| |||| || ||| | || |||| Sbjct 246 GGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTG-GCTTTGACATTGT--CGATCGTGT 302 Query 44277 CGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 || ||||| || || | ||||| ||||| |||||||||||||| || Sbjct 303 CGCTCGATTCGACTTCGAGGGTAATGGTCTTGCCCGTGAGGGTCTTGAC 351 >seq467 Length=17913 Score = 82.4 bits (90), Expect = 5e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 44160 TGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCT 44219 |||| || | ||| ||| |||| || |||||||| |||||||||||||| || |||| Sbjct 11042 TGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAACCGTTGCT 10983 Query 44220 GATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGG 44279 | || | || | || ||||| ||| |||||| ||| | | | |||||||| | Sbjct 10982 GGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCG 10923 Query 44280 CGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 ||| |||||||| | || || ||||| || || ||| Sbjct 10922 AGGACTCCACCTCGAGGGTGATGGTCTTCCCGGTAAGG 10885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359975035384734