Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tremella_20fuciformis_20[genbank_20GCA_5F000987905.1_202015-05-04] 3,502 sequences; 23,635,607 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1820 156 1e-32 seq467 122 2e-22 seq611 105 2e-17 >seq1820 Length=19797 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || |||||||||||||| || || | ||| Sbjct 141 CAGATCTTCGTGAAGACCCTTACTGGCAAGACGATCACCCTCGAAGTCGAGTCCAGCGAC 200 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| || || ||||| || ||||||||| Sbjct 201 ACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAGCAA 260 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || || ||||| || || | || ||| ||||||| ||| || Sbjct 261 CGTCTCATCTTCGCTGGCAAGCAACTCGAGGACGGCCGTACACTTTCCGATTACAACATC 320 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 |||||||| || || || || ||||| Sbjct 321 CAAAAAGAGTCCACCCTCCACCTTGT 346 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||||||||| || || || ||||| ||||| || ||| || ||| Sbjct 597 CAGATTTTCGTCAAAACTCTCACCGGGAAGACAATCACTCTCGAAGTTGAATCGTCCGAC 656 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| ||| ||||| ||||||||||| || ||||| || || |||||| Sbjct 657 ACAATCGACAACGTAAAAGCGAAGATCCAGGACAAAGAGGGCATCCCCCCTGATCAGCAA 716 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || ||||| || |||||| | ||||| | || || ||| | Sbjct 717 CGTCTCATCTTTGCCGGGAAGCAGCTTGAGGATGGACGAACTCTGTCGGACTACAACATT 776 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| || || || || || || Sbjct 777 CAGAAAGAGTCGACTCTTCACCTCGT 802 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| || || || || || ||||| |||||||| ||| || ||| Sbjct 369 CAGATCTTCGTGAAAACGCTTACCGGCAAGACCATCACTCTCGAGGTCGAATCATCTGAC 428 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || |||||| ||||| ||||| || || || || ||||||||| Sbjct 429 ACTATCGACAACGTGAAGGCAAAGATCCAGGATAAAGAGGGTATTCCGCCTGACCAGCAA 488 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||| | ||||| || | || || |||| || ||| || Sbjct 489 CGTCTCATCTTCGCTGGCAAGCAGTTGGAAGACGGCCGCACCCTCTCCGACTACAACATC 548 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| || || || || ||||| Sbjct 549 CAGAAAGAGTCGACCCTTCACCTTGT 574 >seq467 Length=17913 Score = 122 bits (134), Expect = 2e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 || || || || || ||||||||||||||||| ||| ||||||||||| |||||||| Sbjct 10886 CTTACCGGGAAGACCATCACCCTCGAGGTGGAGTCCTCGGACACCATCGACAACGTCAAG 10945 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| |||||||| || || ||||| || ||||||||||| | ||||| ||||| Sbjct 10946 GCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAACGGTTGATCTTTGCCGGC 11005 Query 178062 AAACAGCTCGAAGATGG 178078 || |||||||| || || Sbjct 11006 AAGCAGCTCGAGGACGG 11022 >seq611 Length=5502 Score = 105 bits (116), Expect = 2e-17 Identities = 119/158 (75%), Gaps = 6/158 (4%) Strand=Plus/Minus Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCAGACACCATC 177989 || || || ||||| || || || || |||||||| || ||| ||| ||||| ||| Sbjct 351 GTCAAGACCCTCACGGGCAAGACCATTACCCTCGAAGTCGAATCGAGC---GACACGATC 295 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || |||||| ||||| |||||||| || || || ||||| |||||||| || | Sbjct 294 GACAATGTCAAAGCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGCTTG 235 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 ||||||||||| || ||||| || ||||| | ||||| Sbjct 234 ATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACTCT 197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203677189333388