Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tremella_20fuciformis_20[genbank_20GCA_5F000987905.1_202015-05-04] 3,502 sequences; 23,635,607 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1820 116 3e-21 seq611 102 8e-17 seq1313 86.0 6e-12 seq467 86.0 6e-12 >seq1820 Length=19797 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || || || | || || || || || ||| ||||| ||||| ||||||||| Sbjct 592 CCGCCCCGAAGTCGAAGTACAAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAG 533 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || | ||||||||| ||||| || || || || ||||| | ||| Sbjct 532 AGGGTGCGGCCGTCTTCCAACTGCTTGCCAGCGAAGATGAGACGTTGCTGGTCAGGCGGA 473 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||| || ||| ||| ||| |||| ||| | | | |||||| || || || Sbjct 472 ATACCCTCTTTATCCTGGATCTTTGCCTTC-ACGTTGTCGATAGTGTCAGATGATTCGAC 414 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || || ||||| || ||||| |||||||| Sbjct 413 CTCGAGAGTGATGGTCTTGCCGGTAAGCGTTTTCACGAAGATCTGCAT 366 Score = 102 bits (112), Expect = 8e-17 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || || ||||||||| ||||| |||||| Sbjct 1095 CCACCACGCAGACGGAGCACCAAGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 1036 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || |||||||||||||||||||| |||| ||||| ||||||| |||| Sbjct 1035 AGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCCGGGGGA 976 Query 41756 ACGCTCTCC 41764 | || |||| Sbjct 975 ATGCCCTCC 967 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || || ||| ||||||||||| ||||| || Sbjct 820 CCACCACGGAGACGCAGGACGAGGTGAAGAGTCGACTCTTTCTGAATGTTGTAGTCCGAC 761 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || |||||||| ||||| || || || || || || || | ||| Sbjct 760 AGAGTTCGTCCATCCTCAAGCTGCTTCCCGGCAAAGATGAGACGTTGCTGATCAGGGGGG 701 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||| |||||| || | || |||| ||| | | | |||||| ||| || || Sbjct 700 ATGCCCTCTTTGTCC-TGGATCTTCGCTTTTACGTTGTCGATTGTGTCGGACGATTCAAC 642 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || || || || || || || || |||||||||||||| Sbjct 641 TTCGAGAGTGATTGTCTTCCCGGTGAGAGTTTTGACGAAAATCTGCAT 594 >seq611 Length=5502 Score = 102 bits (112), Expect = 8e-17 Identities = 123/165 (75%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 41687 TAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGG 41746 ||||| ||||| ||||| | || || ||||||||||||||||| |||| |||||| ||| Sbjct 188 TAGTCAGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGG 247 Query 41747 TCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCT 41805 || | |||| || |||||||||| || | || |||| || | | | |||||||| Sbjct 248 TCAGGAGGAATGCCCTCCTTGTCC-TGGATCTTGGCTTTGACATTGTCGATCGTGTCGCT 306 Query 41806 CGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 ||| || || || | || || || || ||||| || ||||| || Sbjct 307 CGATTCGACTTCGAGGGTAATGGTCTTGCCCGTGAGGGTCTTGAC 351 >seq1313 Length=41067 Score = 86.0 bits (94), Expect = 6e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | ||| || || || || ||||||||||||||| |||||||| Sbjct 92 CCACCGCGCAGGCGGAGCACGAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAA 33 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGC 41727 || ||||| |||| ||||||||||||||||| Sbjct 32 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGC 1 >seq467 Length=17913 Score = 86.0 bits (94), Expect = 6e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 41687 TAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGG 41746 ||||| ||||||||||| |||| ||||||||||||||||| || |||| || || ||| Sbjct 11040 TAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAACCGTTGCTGG 10981 Query 41747 TCCGCGGGAACGCTCTCCTTGTCCATGATTTT 41778 || | ||| | || |||||||||| ||| || Sbjct 10980 TCAGGGGGGATGCCCTCCTTGTCCTGGATCTT 10949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462283762642400