Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tricholoma_20matsutake_20[genbank_20GCA_5F001652835.1_202016-05-03] 88,884 sequences; 131,718,925 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq5859 156 4e-33 >seq5859 Length=97331 Score = 156 bits (172), Expect = 4e-33 Identities = 361/542 (67%), Gaps = 3/542 (1%) Strand=Plus/Minus Query 16250 TGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCT 16309 |||| || || || | ||| || | |||||||||||| || | || ||||| || || Sbjct 76185 TGCATACCCTCATCGCGACTGATAAGCTCGTTTGAAAAGGTCAAGCCAGGCATGAGACCA 76126 Query 16310 CGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCG 16369 || || || | ||| || || | || ||||| ||||| || || || ||||| || ||| Sbjct 76125 CGCTTCTTCAACCAGAAGATGGACGCGAATGATCCAGAGAAAAAGATGCCTTCGACAGCG 76066 Query 16370 GCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccattttttagcc 16429 || || || ||||| || |||||| | || || ||| |||||| ||| Sbjct 76065 GCGAAGGCCACCAACCGTTCACCGAATGTCGAATGTTTGTCGGATATCCACCGCAGGGCC 76006 Query 16430 caatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttt 16489 || | || ||| | || | |||| ||| |||| || || | || | ||| | | | Sbjct 76005 CAGTCAGCCTTTCGCTTTATACAGGGAATGGTCTCGATGGCGTCGAAAAGATATTCTCGT 75946 Query 16490 tCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTC 16549 || || |||| || ||||| || || |||| || | || || ||||| || Sbjct 75945 TCCGTGGCATCTTTGATGTAAGTGTCGATGAGTAGGGAGTAGGTCTCGGAGTGAATGTTT 75886 Query 16550 TCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAA 16609 ||||| || || ||||| || || || | ||||| | | ||| ||||| || Sbjct 75885 TCCATCATAATTTGGAAACCGTAGAAACAACGCGCTTCCGCAACTTGGACTTCGTTTGAA 75826 Query 16610 AACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATG 16669 ||||| || | ||| || |||||||| ||||| ||||| || ||||| || | Sbjct 75825 AACCTCTCAAGGAGGTTCTCATTAACTATCCCATCAGACGCTGCGAAGAACGCGAGAACA 75766 Query 16670 TGTTTAATAAAAtttttttCGTTATC--TGA-AAGTTTTAACCAGTCAGAAAAATCTTTT 16726 || || |||| |||||| || ||| | | || ||||||| | ||| || Sbjct 75765 TGAGAGATGAAATGACGTTCGTTGTCGTTGAGACGGTTGTGCCAGTCATGTAGATCCTTG 75706 Query 16727 GATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCAT 16786 || | ||| | |||||| | |||||||| ||||| | |||||||||||||||| |||| Sbjct 75705 GAAAGATCCATCTCTTCGGCGGTCCAAAACGAAGCCTCTGCCTTTTTATACATTTGCCAT 75646 Query 16787 AT 16788 || Sbjct 75645 AT 75644 Score = 134 bits (148), Expect = 1e-26 Identities = 351/536 (65%), Gaps = 11/536 (2%) Strand=Plus/Plus Query 16250 TGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCT 16309 |||| || || || | ||| || | ||| || || ||||| | || ||||| |||||| Sbjct 74129 TGCATGCCCTCATCACGACTAATAAGCTCATTAGAGAATGTCAAGCCAGGCATGAGTCCT 74188 Query 16310 CGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCG 16369 ||||| || | |||||||||||| || ||||| || || || ||||| ||||||||||| Sbjct 74189 CGTTTCTTCAACCAAAATATAGCTGCGAATGATCCGGAGAAAAATATGCCTTCAACTGCA 74248 Query 16370 GCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccattttttagcc 16429 |||||||| | | ||||| | | | | | || | |||||||| |||| Sbjct 74249 GCAAATGCTATGAGGCGCTCCGCAAAAGATGACTGTTCGTCGGCAATCCATTTAAGAGCC 74308 Query 16430 caatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttt 16489 || | ||||| || || ||||| ||| | || ||||| | || | | | | | Sbjct 74309 CAGTCGGCTTTGTGCTTGACACAAGGGATGGTTTCAATTGCCTCGAAAAGGTGAGTCCGT 74368 Query 16490 tCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTC 16549 | | |||| | || ||||| || || ||| ||| |||| ||||| || || Sbjct 74369 TGATGAGGATCTTTGACGTATGTATCAATAAGCAAAGAATAAGTTTCCGAATGTATGTTT 74428 Query 16550 TCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAA 16609 || || | ||||| ||||| ||||| | ||||| | | ||| ||||| || Sbjct 74429 TCGATCATGACTTGAAATCCATAGAAGCAACGGGCTTCTGCGACTTGAACTTCCTGCGAA 74488 Query 16610 AACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATG 16669 || ||||| | |||||| || || || |||||| || || ||||| ||||| || Sbjct 74489 AATCTTTCAATAAGGTTTTCATTGACAATGCCATCGGACGCCGCGAAAAAAGCAAGAATA 74548 Query 16670 TGTTTAATAAAAtttttttCG-------TTATCTGAAAGTTTTAACCAGTCAGAAAAATC 16722 || ||||||| |||| ||| |||| ||| |||||| | ||| Sbjct 74549 TGAGAGATAAAATAACGTTCGTCAGCGTTTAGCTGA----TTTTTCCAGTCCATGAGATC 74604 Query 16723 TTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACA 16778 | ||| | || | |||||| | |||||||| || || | || || || |||| Sbjct 74605 ATGTGAAAGGTCCAATTCTTCTGCGGTCCAAAATGATGCCTCTGCTTTCTTGTACA 74660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461998126042400