Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tricholoma_20matsutake_20[genbank_20GCA_5F001652835.1_202016-05-03] 88,884 sequences; 131,718,925 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq14965 100 2e-16 seq9834 95.1 1e-14 seq68235 93.3 3e-14 seq3995 82.4 6e-11 >seq14965 Length=33111 Score = 100 bits (110), Expect = 2e-16 Identities = 149/210 (71%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 45128 ACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 |||||| |||| ||||| |||||||| ||||| || || || ||| |||| || Sbjct 7840 ACCAAGGTGCAAGGTGCTTTCCTTCTGGATGTTATAATCAGAAAGGGTGCGCCCGTCTTC 7899 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || ||| || || ||||| || | || || |||||||| || | |||||||||||| Sbjct 7900 CAATTGCTTCCCAGCGAAAATGAGACGTTGCTGGTCGGGTGGAATACCCTCCTTGTCTTG 7959 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 ||| || ||| || | | ||||| | ||| ||||||| || || ||||| Sbjct 7960 AATCTTCGCCTTGACATTGTCAATCGTGTCCGAAGACTCTACCTCCAACGTGATAGTCTT 8019 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||||| ||||||||||| || ||||| Sbjct 8020 CCCCGTCAAGGTCTTCACAAAAATCTGCAT 8049 >seq9834 Length=29888 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| |||||||| || || |||| | || || || || || || ||||| Sbjct 178 CTCCTTCTGGATGTTGTAATCAGAGAGAGTGCGACCATCTTCAAGCTGCTTGCCAGCGAA 237 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||| || || || |||||||| | || ||||||||| || || ||| || Sbjct 238 AATCAAGCGTTGCTGATCGGGAGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 297 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | ||||| | ||| ||||| | ||| || ||||| || ||||| ||||| || Sbjct 298 GTCAATGGTGTCCGAAGACTCGACCTCAAGGGTGATGGTCTTTCCTGTCAGCGTCTTGAC 357 Query 45325 AAAGATTTGCAT 45336 ||||||||||| Sbjct 358 GAAGATTTGCAT 369 >seq68235 Length=344 Score = 93.3 bits (102), Expect = 3e-14 Identities = 98/128 (77%), Gaps = 1/128 (1%) Strand=Plus/Minus Query 45127 TACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGT 45185 ||||||| || || ||| ||||||||||||||| |||||| || |||| |||| | Sbjct 128 TACCAAGATGAAGAGTGGACTCCTTCTGAATGTTATAGTCGGAAAGAGTGCGACCGTCCT 69 Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245 | ||||| || || || || ||||| ||||| ||||| || || | |||||||||||| Sbjct 68 CGAGTTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCT 9 Query 45246 CAATTTTT 45253 ||| ||| Sbjct 8 GAATCTTT 1 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 45197 CCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGC 45256 || || || ||||| ||||| ||||| || || | |||||||||||| ||| ||| | Sbjct 343 CCAGCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATCTTTGCC 284 Query 45257 TTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGA 45316 || || | | | | ||| ||||||||||| || |||||||| || || ||| Sbjct 283 TTCACATTGTCAATGGTATCCGACGACTCCACCTCCAGCGTGATCGTCTTTCCAGTAAGA 224 Query 45317 GTCTTCACAAAGATTTGCAT 45336 ||||| |||||||| ||||| Sbjct 223 GTCTTGACAAAGATCTGCAT 204 >seq3995 Length=12643 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 45129 CCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 ||||||| || |||||||||||||| ||||| || || || ||| |||| || | Sbjct 130 CCAAGTGAAGAGTGCTCTCCTTCTGGATGTTATAATCCGAAAGAGTCCGACCGTCCTCGA 71 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || || || || ||||| ||||| ||||| || || | |||||||||||| || Sbjct 70 GCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAA 11 Query 45249 TTTTT 45253 | ||| Sbjct 10 TCTTT 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394647225406564