Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tricholoma_20matsutake_20[genbank_20GCA_5F001652835.1_202016-05-03] 88,884 sequences; 131,718,925 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq5859 203 3e-47 >seq5859 Length=97331 Score = 203 bits (224), Expect = 3e-47 Identities = 378/550 (69%), Gaps = 9/550 (2%) Strand=Plus/Plus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 |||||||||| || | ||||||||| | ||||||||| || || || ||||| || Sbjct 74114 CACGCAAAATTTGTGTGCATGCCCTCATCACGACTAATAAGCTCATTAGAGAATGTCAAG 74173 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 || ||||| | ||||||||| || ||||||||||| || || ||||| ||||| || ||| Sbjct 74174 CCAGGCATGAGTCCTCGTTTCTTCAACCAAAATATAGCTGCGAATGATCCGGAGAAAAAT 74233 Query 13992 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14051 || || |||||||||||||| ||||| | || || |||| |||| | || || | Sbjct 74234 ATGCCTTCAACTGCAGCAAATGCTATGAGGCGCTCCGCAAAAGATGACTGTTCGTCGGCA 74293 Query 14052 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTA 14111 |||||||| |||||| || | ||| | || | | || || |||||||| || | Sbjct 74294 ATCCATTTAAGAGCCCAGTCGGCTTTGTGCTTGACACAAGGGATGGTTTCAATTGCCTCG 74353 Query 14112 AATAAAT-ATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 14170 || | | | ||| | | | || | | | ||||||||||||||| || ||| | Sbjct 74354 AAAAGGTGAGTCCGT-TGATGAGGATCTTTGACGTATGTATCAATAAGCAAAGAATAAGT 74412 Query 14171 TTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTC--CGAC 14228 ||| || ||||||||||| || | ||||| ||||| ||||| | ||||| |||| Sbjct 74413 TTCCGAATGTATGTTTTCGATCATGACTTGAAATCCATAGAAGCAACGGGCTTCTGCGAC 74472 Query 14229 CATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCT 14288 ||| |||||| |||||||||| | |||||||| || || ||||| || Sbjct 74473 --TTGAACTTCCTGCGAAAATCTTTCAATAAGGTTTTCATTGACAATGCCATCGGACGCC 74530 Query 14289 GCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGA---GTTTTTTC 14345 || ||||| || | || | ||||| || | || ||| ||| | | |||||| Sbjct 74531 GCGAAAAAAGCAAGAATATGAGAGATAAAATAACGTTCGTCAGCGTTTAGCTGATTTTTC 74590 Query 14346 CAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCT 14405 || || | ||| | ||||| || | ||| || | |||||||| || | ||| Sbjct 74591 CAGTCCATGAGATCATGTGAAAGGTCCAATTCTTCTGCGGTCCAAAATGATGCCTCTGCT 74650 Query 14406 TTTTTATACA 14415 || || |||| Sbjct 74651 TTCTTGTACA 74660 Score = 125 bits (138), Expect = 7e-24 Identities = 375/578 (65%), Gaps = 3/578 (1%) Strand=Plus/Minus Query 13851 TTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATA 13910 || ||||| | || | || ||||| ||||| || | |||||||| | ||| ||| Sbjct 76221 TTAAGATGACTGAACAGCAAGCACGCGAAATCTGTGTGCATACCCTCATCGCGACTGATA 76162 Query 13911 AGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13970 || ||||||||||| || || || ||||| | || || || || ||||| || || | Sbjct 76161 AGCTCGTTTGAAAAGGTCAAGCCAGGCATGAGACCACGCTTCTTCAACCAGAAGATGGAC 76102 Query 13971 GCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCA 14030 || ||||| || || || || || || || || || || || || | || ||||| || Sbjct 76101 GCGAATGATCCAGAGAAAAAGATGCCTTCGACAGCGGCGAAGGCCACCAACCGTTCACCG 76042 Query 14031 AACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAA 14090 || | | | ||||| |||||||| ||||| |||| ||| || ||| | Sbjct 76041 AATGTCGAATGTTTGTCGGATATCCACCGCAGGGCCCAGTCAGCCTTTCGCTTTATACAG 75982 Query 14091 TCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTA 14150 || || || || || | || | |||||| || | | | | ||||| || Sbjct 75981 GGAATGGTCTCGATGGCGTCGAAAAGATATTCTCGTTCCGTGGCATCTTTGATGTAAGTG 75922 Query 14151 TCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAA 14210 || || |||| | || | || ||||| ||||||||||| || || ||||| || Sbjct 75921 TCGATGAGTAGGGAGTAGGTCTCGGAGTGAATGTTTTCCATCATAATTTGGAAACCGTAG 75862 Query 14211 AAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTA 14270 || || | ||||||| ||| ||||| |||| || || | || |||||| Sbjct 75861 AAACAACGCGCTTCCGCAACTTGGACTTCGTTTGAAAACCTCTCAAGGAGGTTCTCATTA 75802 Query 14271 ACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCA 14330 ||||| |||||| ||||| || || || | | | || || | | || | Sbjct 75801 ACTATCCCATCAGACGCTGCGAAGAACGCGAGAACATGAGAGATGAAATGACGTTCGTTG 75742 Query 14331 TTGTTGA---GTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTC 14387 | ||||| | || | ||| || || |||||| |||||||| | || || | ||| Sbjct 75741 TCGTTGAGACGGTTGTGCCAGTCATGTAGATCCTTGGAAAGATCCATCTCTTCGGCGGTC 75682 Query 14388 CAAAAACTAGCGACAGCTTTTTTATACATTACCCATAT 14425 ||||| ||| | || |||||||||||| |||||| Sbjct 75681 CAAAACGAAGCCTCTGCCTTTTTATACATTTGCCATAT 75644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479194998205600