Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tricholoma_20matsutake_20[genbank_20GCA_5F001652835.1_202016-05-03] 88,884 sequences; 131,718,925 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq5859 223 3e-53 >seq5859 Length=97331 Score = 223 bits (246), Expect = 3e-53 Identities = 380/548 (69%), Gaps = 5/548 (1%) Strand=Plus/Plus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 |||||||||| || | ||||||||| | ||||||||| || || || ||||| || Sbjct 74114 CACGCAAAATTTGTGTGCATGCCCTCATCACGACTAATAAGCTCATTAGAGAATGTCAAG 74173 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 13779 || ||||| | ||||||||| || ||||||||||| || |||||||||||||| || ||| Sbjct 74174 CCAGGCATGAGTCCTCGTTTCTTCAACCAAAATATAGCTGCGAATGATCCGGAGAAAAAT 74233 Query 13780 ATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT 13839 || || |||||||||||||| ||||| || || || |||| |||| | || || | Sbjct 74234 ATGCCTTCAACTGCAGCAAATGCTATGAGGCGCTCCGCAAAAGATGACTGTTCGTCGGCA 74293 Query 13840 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTG 13899 |||||||| |||||| || | ||| | || | | || || ||||| ||||| | | Sbjct 74294 ATCCATTTAAGAGCCCAGTCGGCTTTGTGCTTGACACAAGGGATGGTTTCAATTGCCTCG 74353 Query 13900 AATAAATG-TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 13958 || | || ||| | | | || | | | ||||||||||||||| || ||| | Sbjct 74354 AAAAGGTGAGTCCGT-TGATGAGGATCTTTGACGTATGTATCAATAAGCAAAGAATAAGT 74412 Query 13959 TTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCA 14018 ||| || ||||||||||| || | ||||| ||||| || || | ||||||| Sbjct 74413 TTCCGAATGTATGTTTTCGATCATGACTTGAAATCCATAGAAGCAACGGGCTTCTGCGAC 74472 Query 14019 TTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGC 14078 ||| || ||| |||||||||| | ||||||||| ||||| ||||| || || Sbjct 74473 TTGAACTTCCTGCGAAAATCTTTCAATAAGGTTTTCATTGACAATGCCATCGGACGCCGC 74532 Query 14079 AAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGA---GTTTTTTCCA 14135 ||||| || | || | ||||| || | || ||| ||| | | |||||||| Sbjct 74533 GAAAAAAGCAAGAATATGAGAGATAAAATAACGTTCGTCAGCGTTTAGCTGATTTTTCCA 74592 Query 14136 ATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTT 14195 || | ||| | ||||| || | ||| || | |||||||| || | ||||| Sbjct 74593 GTCCATGAGATCATGTGAAAGGTCCAATTCTTCTGCGGTCCAAAATGATGCCTCTGCTTT 74652 Query 14196 TTTATACA 14203 || |||| Sbjct 74653 CTTGTACA 74660 Score = 125 bits (138), Expect = 7e-24 Identities = 375/578 (65%), Gaps = 3/578 (1%) Strand=Plus/Minus Query 13639 TTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATA 13698 || ||||| | || | || ||||| ||||| || | |||||||| | ||| ||| Sbjct 76221 TTAAGATGACTGAACAGCAAGCACGCGAAATCTGTGTGCATACCCTCATCGCGACTGATA 76162 Query 13699 AGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13758 || ||||||||||| || || || ||||| | || || || || ||||| || || | Sbjct 76161 AGCTCGTTTGAAAAGGTCAAGCCAGGCATGAGACCACGCTTCTTCAACCAGAAGATGGAC 76102 Query 13759 GCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCA 13818 ||||||||||| || || || || || || || || || || || | | ||||| || Sbjct 76101 GCGAATGATCCAGAGAAAAAGATGCCTTCGACAGCGGCGAAGGCCACCAACCGTTCACCG 76042 Query 13819 AACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAA 13878 || | | | ||||| |||||||| ||||| |||| ||| || ||| | Sbjct 76041 AATGTCGAATGTTTGTCGGATATCCACCGCAGGGCCCAGTCAGCCTTTCGCTTTATACAG 75982 Query 13879 TCCATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTA 13938 || || ||||| || | ||| | || ||| || | | | | ||||| || Sbjct 75981 GGAATGGTCTCGATGGCGTCGAAAAGATATTCTCGTTCCGTGGCATCTTTGATGTAAGTG 75922 Query 13939 TCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAA 13998 || || |||| | || | || ||||| |||||||| || || || ||||| || Sbjct 75921 TCGATGAGTAGGGAGTAGGTCTCGGAGTGAATGTTTTCCATCATAATTTGGAAACCGTAG 75862 Query 13999 AAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTA 14058 ||||| | ||||| | ||| || || |||| || || | ||| |||||| Sbjct 75861 AAACAACGCGCTTCCGCAACTTGGACTTCGTTTGAAAACCTCTCAAGGAGGTTCTCATTA 75802 Query 14059 ACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCA 14118 || || |||||| ||||| || || || | | | || || | | || | Sbjct 75801 ACTATCCCATCAGACGCTGCGAAGAACGCGAGAACATGAGAGATGAAATGACGTTCGTTG 75742 Query 14119 TTGTTGA---GTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTC 14175 | ||||| | || | ||| || || |||||| |||||||| | || || | ||| Sbjct 75741 TCGTTGAGACGGTTGTGCCAGTCATGTAGATCCTTGGAAAGATCCATCTCTTCGGCGGTC 75682 Query 14176 CAAAAACTAGCGACAGCTTTTTTATACATTACCCATAT 14213 ||||| ||| | || |||||||||||| |||||| Sbjct 75681 CAAAACGAAGCCTCTGCCTTTTTATACATTTGCCATAT 75644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478057063913760