Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tricholoma_20matsutake_20[genbank_20GCA_5F001652835.1_202016-05-03] 88,884 sequences; 131,718,925 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq5859 147 2e-30 >seq5859 Length=97331 Score = 147 bits (162), Expect = 2e-30 Identities = 379/575 (66%), Gaps = 3/575 (1%) Strand=Plus/Minus Query 13133 AGATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGC 13192 ||||| | |||| || || || ||||| ||||| || ||||| | ||| || ||| Sbjct 76218 AGATGACTGAACAGCAAGCACGCGAAATCTGTGTGCATACCCTCATCGCGACTGATAAGC 76159 Query 13193 TCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCA 13252 ||||||||||| || | || ||||| || || || || || | ||| || || | || Sbjct 76158 TCGTTTGAAAAGGTCAAGCCAGGCATGAGACCACGCTTCTTCAACCAGAAGATGGACGCG 76099 Query 13253 AACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATAC 13312 || || || || ||||| || ||||| || || || || || | ||||| |||||| | Sbjct 76098 AATGATCCAGAGAAAAAGATGCCTTCGACAGCGGCGAAGGCCACCAACCGTTCACCGAAT 76039 Query 13313 GTACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTC 13372 || || ||| ||||||| |||||||| || ||| | || | ||| Sbjct 76038 GTCGAATGTTTGTCGGATATCCACCGCAGGGCCCAGTCAGCCTTTCGCTTTATACAGGGA 75979 Query 13373 ATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCT 13432 || | || || |||| || | ||| | | |||| | ||| || ||||| || Sbjct 75978 ATGGTCTCGATGGCGTCGAAAAGATATTCTCGTTCCGTGGCATCTTTGATGTAAGTGTCG 75919 Query 13433 ATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAA 13492 || | || | || | || || ||||| ||||||||| ||||||||||| || ||| Sbjct 75918 ATGAGTAGGGAGTAGGTCTCGGAGTGAATGTTTTCCATCATAATTTGGAAACCGTAGAAA 75859 Query 13493 CATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACT 13552 || | || || | || || |||||| |||| || || | ||| || |||||| Sbjct 75858 CAACGCGCTTCCGCAACTTGGACTTCGTTTGAAAACCTCTCAAGGAGGTTCTCATTAACT 75799 Query 13553 ATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTC- 13611 ||||| ||| || || || || || || | || || || | |||||| || Sbjct 75798 ATCCCATCAGACGCTGCGAAGAACGCGAGAACATGAGAGATGAAATGACGTTCGTTGTCG 75739 Query 13612 -TGACA-ACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAA 13669 ||| | || ||| || | | ||| || || | ||| | ||| || |||||||| Sbjct 75738 TTGAGACGGTTGTGCCAGTCATGTAGATCCTTGGAAAGATCCATCTCTTCGGCGGTCCAA 75679 Query 13670 AAAGAAGCAACAGCCTTCTTATACATCATCCATAT 13704 || ||||| | ||||| |||||||| |||||| Sbjct 75678 AACGAAGCCTCTGCCTTTTTATACATTTGCCATAT 75644 Score = 140 bits (154), Expect = 3e-28 Identities = 309/460 (67%), Gaps = 10/460 (2%) Strand=Plus/Plus Query 13133 AGATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGC 13192 |||||| | || | | || ||||||| ||||| || ||||| | ||| || ||| Sbjct 74096 AGATGCGTGAAGAGGAGGCACGCAAAATTTGTGTGCATGCCCTCATCACGACTAATAAGC 74155 Query 13193 TCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCA 13252 || || || ||||| | || ||||| || |||||||| || | |||||||||||| || Sbjct 74156 TCATTAGAGAATGTCAAGCCAGGCATGAGTCCTCGTTTCTTCAACCAAAATATAGCTGCG 74215 Query 13253 AACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATAC 13312 || || || || |||||||| ||||||||||| ||||| ||||| | | || || | Sbjct 74216 AATGATCCGGAGAAAAATATGCCTTCAACTGCAGCAAATGCTATGAGGCGCTCCGCAAAA 74275 Query 13313 GTACTATTTTTACTC-TCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTT 13371 | | | | || || | ||||| || ||||||| ||||| || || || || Sbjct 74276 G-ATGACTGTTCGTCGGCAATCCATTTAAGAGCCCAGTCGGCTTTGTGCTTGACACAAGG 74334 Query 13372 CATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATC 13431 || |||| ||||| | || | | | | || | | ||| | | |||| Sbjct 74335 GATGGTTTCAATTGCCTCGAAAAGGTGAGTCCGTTGATGAGGATCT----TTGACGTATG 74390 Query 13432 TATCAATAAGC----TATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCAT 13487 ||||||||||| ||| |||| ||||| || ||||| ||| | ||| || |||| Sbjct 74391 TATCAATAAGCAAAGAATAAGTTTCCGAATGTATGTTTTCGATCATGACTTGAAATCCAT 74450 Query 13488 AAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGT 13547 | || || | || |||| || |||||||| |||||||||| | |||||| | Sbjct 74451 AGAAGCAACGGGCTTCTGCGACTTGAACTTCCTGCGAAAATCTTTCAATAAGGTTTTCAT 74510 Query 13548 TAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTG 13587 | || || || || || || ||||||||||| || || Sbjct 74511 TGACAATGCCATCGGACGCCGCGAAAAAAGCAAGAATATG 74550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430515528079368