Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tricholoma_20matsutake_20[genbank_20GCA_5F001652835.1_202016-05-03] 88,884 sequences; 131,718,925 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq4287 104 4e-18 seq2733 87.8 3e-13 seq17066 82.4 1e-11 seq1370 82.4 1e-11 >seq4287 Length=28954 Score = 104 bits (114), Expect = 4e-18 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| || || ||||| || || |||||||| ||||||||||| || || |||||| |||| Sbjct 11384 AGGTATTACAAAGCCTGCCATTCGTCGTCTTGCTCGTCGTGGAGGTGTGAAGCGTATCTC 11325 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCT 16575 ||| || |||||||||||| |||| ||| ||||| |||||||| Sbjct 11324 TGGTCTGATCTATGAAGAGACGCGTGGTGTCTTGAAAATCTTCCT 11280 >seq2733 Length=15309 Score = 87.8 bits (96), Expect = 3e-13 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| || || ||||| ||||||||| |||| |||| || ||| || || ||| || |||| Sbjct 12914 AGGTATTACAAAGCCTGCTATCCGTTGTCTCGCTCATCATGGAGGTGTGAAGTGTATCTC 12855 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGAC 16581 ||| | |||||||||||| || || ||| ||||| ||| |||| |||| Sbjct 12854 TGGTCTTATCTATGAAGAGACTCATGGTGTATTGAAAATCCTCCTTGAGAC 12804 >seq17066 Length=25006 Score = 82.4 bits (90), Expect = 1e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||| ||||| || || || ||||| |||||||||||||| || |||||| | || Sbjct 3519 AGGTATCACGAAGCCTGCCATTCGCCGTCTCGCTCGTCGTGGTGGTGTGAAGCGTATTTC 3578 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCA 16590 || | |||| || |||| || | || |||| || ||||| ||| |||||||| Sbjct 3579 AGGCCTTATCTACGAGGAGACACGCGGAGTACTGAAAATATTCCTGGAGAACGTTATCCG 3638 Query 16591 TGATGCTTTCCACTATACCGAGCACGCTAAACG 16623 || | | || || ||||| |||||||| Sbjct 3639 GGACTCGGTTACTTACACGGAGCATGCTAAACG 3671 >seq1370 Length=16708 Score = 82.4 bits (90), Expect = 1e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||| ||||| || || |||||||| ||||||||||| || || |||||| | || Sbjct 9265 AGGTATCACAAAGCCTGCCATTCGTCGTCTTGCTCGTCGTGGAGGTGTGAAGCGTATTTC 9324 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCT 16575 || | | ||||| |||| |||| || ||||| |||||||| Sbjct 9325 CGGTCTTATATATGAGGAGACGCGTGGGGTCTTGAAAATCTTCCT 9369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78993932736612