Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tricholoma_20matsutake_20[genbank_20GCA_5F001652835.1_202016-05-03] 88,884 sequences; 131,718,925 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq5859 134 4e-26 seq4769 96.9 9e-15 >seq5859 Length=97331 Score = 134 bits (148), Expect = 4e-26 Identities = 310/460 (67%), Gaps = 9/460 (2%) Strand=Plus/Minus Query 22190 ACGAACAACATTTTATCAAATATATTCTAGCATTCTTTGCTACCGCAGACGGTATAGTTT 22249 |||||| |||||||| ||||||| || || || || | | || || || || Sbjct 74570 ACGAACGTTATTTTATCTCTCATATTCTTGCTTTTTTCGCGGCGTCCGATGGCATTGTCA 74511 Query 22250 TTGAGAATCT-AGTGACTAATTTT-GCATCTGAAATTCAATACCCAGAGGCCAGATGTTT 22307 ||| || || | ||| ||||| ||| ||| ||||| | |||| ||| | || || Sbjct 74510 ATGAAAACCTTATTGAAAGATTTTCGCAG--GAAGTTCAAGTCGCAGAAGCCCGTTGCTT 74453 Query 22308 CTATGGTGTGCAAATGATGATTGAAAATGTTCACGCGGAAACATATTCTATGATGCTACA 22367 |||||| | ||| | ||||| ||||| | || ||||||| |||||| || | | | Sbjct 74452 CTATGGATTTCAAGTCATGATCGAAAACATACATTCGGAAACTTATTCTTTGCTTATTGA 74393 Query 22368 GTCACTCGTAGAAGATAAAGACGAACA-ACGAAACTTATTCCGCGCGATTCGCACCATTC 22426 || ||| ||||| | ||| || | ||| ||| || ||| ||||| | Sbjct 74392 TACATACGTCAAAGATCCTCATCAACGGACTCACCTT-TTCGAGGCAATTGAAACCATCC 74334 Query 22427 AATCAATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCAT--- 22483 | | ||| | || || || ||||| || |||||||| | | |||| |||| Sbjct 74333 CTTGTGTCAAGCACAAAGCCGACTGGGCTCTTAAATGGATTGCCGACGAACAGTCATCTT 74274 Query 22484 TCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTT 22543 | ||||| || || || |||||||||| ||||||||||| || || || ||| |||| Sbjct 74273 TTGCGGAGCGCCTCATAGCATTTGCTGCAGTTGAAGGCATATTTTTCTCCGGATCATTCG 74214 Query 22544 GTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGT 22603 || || |||||| | || ||||| | | | ||||| || | || || || |||||| Sbjct 74213 CAGCTATATTTTGGTTGAAGAAACGAGGACTCATGCCTGGCTTGACATTCTCTAATGAGC 74154 Query 22604 TAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTG 22643 | ||||| || |||||||| | || || |||||||||| Sbjct 74153 TTATTAGTCGTGATGAGGGCATGCACACAAATTTTGCGTG 74114 Score = 96.9 bits (106), Expect = 9e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 22759 CTCATTGGTATCAATGCCGAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTA 22818 ||||| || || ||||| | || ||| || ||||||| | ||||| || ||||| ||| Sbjct 73950 CTCATCGGCATGAATGCAGTATTGATGTGTCAATATATTGAGTTTGTGGCCGATCGCCTA 73891 Query 22819 TTAATTTCACTCGGTTATGCAAAGCATTATAACGTCGTTAATCCATTTGAATGGATGGAA 22878 | | || || || ||| |||| | ||||| | |||||||| || | ||||| Sbjct 73890 CTTGTATCCCTTGGAAATGAAAAGTACTATAATGCAACAAATCCATTCGATTTTATGGAT 73831 Query 22879 CTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAA 22938 | || |||||| |||| ||||||||||||||||| || || || |||||| ||| Sbjct 73830 ATGATCTCACTTCAAGGGAAGACCAATTTCTTCGAGAAGAGGGTATCCGAATACTCTAAA 73771 Query 22939 GCA 22941 ||| Sbjct 73770 GCA 73768 >seq4769 Length=19565 Score = 96.9 bits (106), Expect = 9e-15 Identities = 165/238 (69%), Gaps = 1/238 (0%) Strand=Plus/Plus Query 363736 TACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGAC 363795 |||||| ||||| |||||||||||||| | || ||||||||||||| | ||| Sbjct 6789 TACATTGCTGGCACCAATGGATACTCGAATGGCATTGTGCCCATGCTTCGTGCTTATGAT 6848 Query 363796 AATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTAT 363855 ||||| |||| ||||| || || || || || || || || | || ||| Sbjct 6849 GCCACTGCTCGGTATGTCGATCAAGGGGGTAACAAACGACCTGGTGCTTTCACGATTTAT 6908 Query 363856 CTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAA 363915 |||| || || || ||||| || || || |||| || |||| ||| |||||| Sbjct 6909 ATCGAACCATGGCACGCGGATATCTTCGATTTCATTGACCTGAGGAAGAACCACGGAAAA 6968 Query 363916 GAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTT-TATG 363972 |||||| || ||| | |||||||| |||||||| ||| | | |||| ||| |||| Sbjct 6969 GAGGAAGCTCGCGCAAGAGATCTGTTTTATGCACTCTGGATACCGGACCTTTTGTATG 7026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1301869306707288