Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tricholoma_20matsutake_20[genbank_20GCA_5F001652835.1_202016-05-03] 88,884 sequences; 131,718,925 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq309 140 2e-28 seq80909 111 1e-19 seq17536 98.7 7e-16 seq6710 84.2 1e-11 >seq309 Length=8742 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 2782 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 2841 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 2842 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2876 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 4789 CTCTCTTTCCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 4848 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 4849 GCCAATATTTAGCTTTA 4865 >seq80909 Length=985 Score = 111 bits (122), Expect = 1e-19 Identities = 81/94 (86%), Gaps = 4/94 (4%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG----GTAATCTCGTT 25957 |||| ||||||||||||||||||| |||||||||||||||| | | ||||||||| Sbjct 910 AAGCATGTTCCCTTGGCTGTGGTTTTGCTAGATAGTAGATAGAGACAGTGGAATCTCGTT 851 Query 25958 AATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||| ||||||||| ||||||||||||||| || Sbjct 850 AATCCATTCATGCGCATCACTAATTAGATGATGA 817 >seq17536 Length=10914 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||| |||||||||||||| |||||||||| |||||||||||||||| |||||| | Sbjct 1049 CTCTCTCTCCAAAGTTCTTTTCATCTTTCCCTCATGGTACTTGTTCGCTATTGGTCTCTC 1108 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||| ||| Sbjct 1109 ACCAATATTTAGCTTTA 1125 >seq6710 Length=8625 Score = 84.2 bits (92), Expect = 1e-11 Identities = 176/261 (67%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293 ||| |||| || || || || || || || || || || |||||| |||| || || Sbjct 4552 AAGATCGAAGGCAAAGGCAATGGCATCAAGACGGTGATCCCTAACATGTCTGACGTTGCG 4611 Query 6294 AAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCT 6353 |||||| | || || | || ||| | || |||| || || |||| || ||||| Sbjct 4612 CGGGCGCTTAGTCGTCCCCCGACATACACCACCAAATTCTTTGGCAGCGAGCTCGGCGCC 4671 Query 6354 CAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCC 6413 |||||| ||||| | || ||||| |||| |||||||||||| | |||||| ||| Sbjct 4672 CAGACGTCTTTTGACGAAAAGAACGACCGCTACATCGTTAACGGCGCTCATAAC---GCC 4728 Query 6414 AA---GCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGC 6470 || || | || | ||||| | || || ||||||||| || || | ||| Sbjct 4729 AACCGTCTCCGAGAACTCCTTGATGTGTTCATCGACAAGTTTGTTCTTTGCAAGTCCTGC 4788 Query 6471 GATAACCCGGAGACCGAGCTT 6491 | || || || ||||||||| Sbjct 4789 AAGAATCCAGAAACCGAGCTT 4809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334584360490604