Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tricholoma_20matsutake_20[genbank_20GCA_5F001652835.1_202016-05-03] 88,884 sequences; 131,718,925 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq14965 170 5e-37 seq9834 107 5e-18 seq14872 93.3 1e-13 seq68235 91.5 3e-13 >seq14965 Length=33111 Score = 170 bits (188), Expect = 5e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||||| ||| || ||||| | || ||| || |||||||| ||||| | Sbjct 8051 CCACCACGGAGTCGAAGGACAAGATGCAGTGTTGATTCCTTCTGGATATTGTAGTCTGAA 8110 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || ||||| || || || ||||||| |||||| ||| ||| Sbjct 8111 AGGGTGCGCCCGTCCTCCAATTGCTTCCCGGCAAAGATCAAACGCTGCTGATCCGGAGGG 8170 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| ||||||||||| |||||||| ||||| || || | || ||||| ||| Sbjct 8171 ATACCTTCCTTATCCTGGATCTTCGCTTTAACGTTGTCGATGGTGTCTGATGATTCCACT 8230 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| |||||||| |||| ||||| ||||| |||||||| Sbjct 8231 TCGAGGGTGATAGTCTTCCCTGTCAATGTCTTCACGAAGATCTGCAT 8277 >seq9834 Length=29888 Score = 107 bits (118), Expect = 5e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 288265 ACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCT 288324 |||||||||| || || || ||||| || || || | ||| ||||| || ||||| Sbjct 161 ACGAGATGAAGGGTAGACTCCTTCTGGATGTTGTAATCAGAGAGAGTGCGACCATCTTCA 220 Query 288325 AATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGG 288384 | || || || ||||| |||| || || ||| || |||||||| || |||||| Sbjct 221 AGCTGCTTGCCAGCGAAAATCAAGCGTTGCTGATCGGGAGGAATTCCTTCCTTGTCCTGG 280 Query 288385 ATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTC 288444 || || || || ||||| || || | || || || || || || ||||| ||||| Sbjct 281 ATCTTGGCCTTGACGTTGTCAATGGTGTCCGAAGACTCGACCTCAAGGGTGATGGTCTTT 340 Query 288445 CCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||||||||| || ||||| Sbjct 341 CCTGTCAGCGTCTTGACGAAGATTTGCAT 369 >seq14872 Length=27679 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| || ||||||||||| ||||| ||||| || || | || |||||| || || Sbjct 25238 CCTTCCTTGTCCTGGATTTTGGCTTTGACGTTGTCAATGGTGTCCGACGATTCCACCTCA 25297 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||||||||| || || ||||||||||| || ||||| Sbjct 25298 AGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAGATTTGCAT 25341 >seq68235 Length=344 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || ||||||| ||||| || | ||||| || || || ||||| || || || Sbjct 343 CCAGCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATCTTTGCC 284 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||| || || || | ||| ||| || || || |||||||||||||| || || ||| Sbjct 283 TTCACATTGTCAATGGTATCCGACGACTCCACCTCCAGCGTGATCGTCTTTCCAGTAAGA 224 Query 288454 GTCTTGACGAATATCTGCAT 288473 |||||||| || |||||||| Sbjct 223 GTCTTGACAAAGATCTGCAT 204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178310978603352