Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tricholoma_20matsutake_20[genbank_20GCA_5F001652835.1_202016-05-03] 88,884 sequences; 131,718,925 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq5859 111 2e-18 seq67468 87.8 2e-11 seq24361 87.8 2e-11 seq1742 87.8 2e-11 >seq5859 Length=97331 Score = 111 bits (122), Expect = 2e-18 Identities = 203/290 (70%), Gaps = 13/290 (4%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| || ||||||||||| | ||||| ||||| | ||| |||||||| || ||||| Sbjct 76180 ACCCTCATCGCGACTGATAAGCTCGTTTGAAAAGGTCAAGCCAGGCATGAGACCACGCTT 76121 Query 869239 CTTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 869297 ||| | ||| ||||||| ||| ||| || |||||||||||||| ||||| ||||| | Sbjct 76120 CTTCAACCAGAAGATGGACGC-GAATGATCCAGAGAAAAAGATGCCTTCGACAGCGGCGA 76062 Query 869298 AGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTG---ATCCACTTCATCG 869354 || | | | ||| || | || |||||| | |||| | |||||| || | Sbjct 76061 AGGCCACCAACCGTTCACCGAA--TGTCGA----ATGTTTGTCGGATATCCACCGCAGGG 76008 Query 869355 CCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG-CGAAAGAGGTGGTCC 869413 ||||||| |||||| | | | | || | || ||||||||| ||||| || | || Sbjct 76007 CCCAGTCAGCCTTTCGCTTTATACAGGGAATGGTCTCGATGGCGTCGAAA-AGATATTCT 75949 Query 869414 TTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 ||| | | || |||| || |||||||| || || || |||||||| Sbjct 75948 CGTTCCGTGGCATCTTTGATGTAAGTGTCGATGAGTAGGGAGTAGGTCTC 75899 Score = 93.3 bits (102), Expect = 5e-13 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 868717 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGG 868776 |||||| || |||||||| || | || ||||||| ||||| | ||| || || | Sbjct 73795 CTCGAAGAAATTGGTCTTCCCTTGAAGTGAGATCATATCCATAAAATCGAATGGATTTGT 73854 Query 868777 CGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGACAAACTCGAT 868836 | || |||| |||||| ||| || || | || ||||| ||||| |||||||| || Sbjct 73855 TGCATTATAGTACTTTTCATTTCCAAGGGATACAAGTAGGCGATCGGCCACAAACTCAAT 73914 Query 868837 GTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACCGGCAGCGACTC 868890 || || ||||| | | || |||||||||||||| ||||| || || || || Sbjct 73915 ATATTGACACATCAATACTGCATTCATGCCGATGAGTGCCACAGGAAGAGAGTC 73968 >seq67468 Length=392 Score = 87.8 bits (96), Expect = 2e-11 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 1254462 ATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGG 1254521 || || |||||||| ||||||| || | ||| | ||||||||||| || | || ||| Sbjct 374 ATATCATTGACAAAGGAGTTCAGGATTGCCATTGTTTTGTTGGAGATACCAATATCAGGG 315 Query 1254522 TGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 || ||||||||||| |||||||||||| | || ||||| Sbjct 314 TGGACCTGCTTGAGGACCTTGTAGATGTATGAAGAGTA 277 >seq24361 Length=611 Score = 87.8 bits (96), Expect = 2e-11 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 1254462 ATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGG 1254521 || || |||||||| ||||||| || | ||| | ||||||||||| || | || ||| Sbjct 593 ATATCATTGACAAAGGAGTTCAGGATTGCCATTGTTTTGTTGGAGATACCAATATCAGGG 534 Query 1254522 TGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 || ||||||||||| |||||||||||| | || ||||| Sbjct 533 TGGACCTGCTTGAGGACCTTGTAGATGTATGAAGAGTA 496 >seq1742 Length=2907 Score = 87.8 bits (96), Expect = 2e-11 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 1254462 ATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGG 1254521 ||||| |||||||| ||||||| || | ||| | ||||||||||| || || ||| Sbjct 2384 ATGTCATTGACAAAGGAGTTCAGGATTGCCATTGTTTTGTTGGAGATACCAGTATCAGGG 2443 Query 1254522 TGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 || ||||||||||| |||||||||||| | || ||||| Sbjct 2444 TGGACCTGCTTGAGGACCTTGTAGATGTATGAAGAGTA 2481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6099844962716228