Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tricholoma_20matsutake_20[genbank_20GCA_5F001652835.1_202016-05-03] 88,884 sequences; 131,718,925 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq9834 122 8e-23 seq14965 118 1e-21 seq68235 107 2e-18 seq3995 102 8e-17 seq11775 100 3e-16 >seq9834 Length=29888 Score = 122 bits (134), Expect = 8e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| || || ||||| || || ||||||||| ||||| || || || Sbjct 142 GCCGCCACGCAGACGCAAAACGAGATGAAGGGTAGACTCCTTCTGGATGTTGTAATCAGA 201 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| ||||| | || || ||||||||||| ||||| |||| ||| || || || | || Sbjct 202 GAGAGTGCGACCATCTTCAAGCTGCTTGCCAGCGAAAATCAAGCGTTGCTGATCGGGAGG 261 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | ||||||||| || | || || | ||| | | | ||||| ||||| | Sbjct 262 AATTCCTTCCTTGTCC-TGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAAGACTCGA 320 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || || || || ||||||||||| ||||| || ||||| Sbjct 321 CCTCAAGGGTGATGGTCTTTCCTGTCAGCGTCTTGACGAAGATTTGCAT 369 >seq14965 Length=33111 Score = 118 bits (130), Expect = 1e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 41657 AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGC 41716 || |||| ||||| |||||||| |||||||| || || ||||||||| |||| || | Sbjct 7844 AGGTGCAAGGTGCTTTCCTTCTGGATGTTATAATCAGAAAGGGTGCGCCCGTCTTCCAAT 7903 Query 41717 TGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATT 41776 ||||| || ||||| || || || || ||||| | |||| | ||||||||| ||| | Sbjct 7904 TGCTTCCCAGCGAAAATGAGACGTTGCTGGTCGGGTGGAATACCCTCCTTGTCT-TGAAT 7962 Query 41777 TTTTGCTTCAACGACGACACA-GTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACC 41835 || || | || | || ||||| ||||| ||||||| ||| || || || || Sbjct 7963 CTTCGCCTTGACATTGTCAATCGTGTCCGAAGACTCTACCTCCAACGTGATAGTCTTCCC 8022 Query 41836 CGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| ||||| || ||||||||||| Sbjct 8023 CGTCAAGGTCTTCACAAAAATCTGCAT 8049 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||||||| || || |||||||||||| ||||||||||| Sbjct 8279 CCACCACGCAGACGGAGAACCAGATGAAGGGTCGACTCCTTCTGAATATTATAGTCGGAC 8338 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 || || || | || || || |||||||| ||||| || || || |||||||| Sbjct 8339 AGCGTACGACCATCCTCTAGTTGCTTGCCAGCGAAGATTAGACGTTGTTGGTC 8391 >seq68235 Length=344 Score = 107 bits (118), Expect = 2e-18 Identities = 99/124 (80%), Gaps = 1/124 (1%) Strand=Plus/Minus Query 41657 AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGC 41716 ||||| || ||| |||||||||||||||||||||||| || ||||| |||| ||||| Sbjct 123 AGATGAAGAGTGGACTCCTTCTGAATGTTATAGTCGGAAAGAGTGCGACCGTCCTCGAGT 64 Query 41717 TGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATT 41776 ||||| || || || |||| |||||| ||||| | || | || |||||||||| ||| | Sbjct 63 TGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC-TGAAT 5 Query 41777 TTTT 41780 ||| Sbjct 4 CTTT 1 >seq3995 Length=12643 Score = 102 bits (112), Expect = 8e-17 Identities = 97/123 (79%), Gaps = 1/123 (1%) Strand=Plus/Minus Query 41660 TGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGC 41719 || || |||||||||||||| |||||||| || || || || || |||| ||||||||| Sbjct 125 TGAAGAGTGCTCTCCTTCTGGATGTTATAATCCGAAAGAGTCCGACCGTCCTCGAGCTGC 66 Query 41720 TTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTT 41779 || || || || |||| |||||| ||||| | || | || |||||||||| ||| | || Sbjct 65 TTACCAGCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC-TGAATCTT 7 Query 41780 TGC 41782 ||| Sbjct 6 TGC 4 >seq11775 Length=34147 Score = 100 bits (110), Expect = 3e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || |||||| || |||||||||||| | Sbjct 24253 CCACCACGGAGACGGAGAACCAAGTGGAGTGTAGACTCCTTTTGTATGTTATAGTCGCTG 24194 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 || ||||| |||| ||||||||||||||||| || ||||||||||||||||| Sbjct 24193 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGTTGGTC 24141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461790357140800