Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichosporon_20asahii_20[genbank_20GCA_5F001972365.1_202016-12-09] 36 sequences; 24,687,929 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq3 105 6e-18 seq4 82.4 6e-11 seq1 82.4 6e-11 >seq3 Length=2330021 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | ||| | || |||||||| || ||||| ||||| | | Sbjct 20158 CCACCGCGGAGACGGAGAACGAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAC 20099 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || ||||||| ||||| ||||||||| | ||||| | ||||||||| || Sbjct 20098 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCCGCAAAGATAAGACGCTGCTGGTCGGGAGGA 20039 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||||| || || | | ||| || || | ||| Sbjct 20038 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTGTCGGACGACTCGACC 19979 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 || | || |||||||||||||| | || || ||||| || |||||| Sbjct 19978 TCGAGAGTGATGGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCATT 19931 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| |||||||| ||||||| || || | | ||||||||||| || || Sbjct 20584 GTGGACTCCTTCTGAATGTTGTAGTCCGAGAGCGTACGTCCATCCTCCAGCTGCTTTCCA 20525 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || | ||||||||| ||| | ||| |||||||| ||||| ||| Sbjct 20524 GCAAAGATCAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGAATCTTCGACTTC 20465 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | ||| ||| || || ||| |||| || || ||||||||||| | || Sbjct 20464 ACGTTGTCGATAGTGTCCGAGGACTCGACCTCCAGCGTGATCGTCTTGCCGGTGAGGGTC 20405 Query 21159 TTGACAAATATTTGCATT 21176 ||||| || || |||||| Sbjct 20404 TTGACGAAGATCTGCATT 20387 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || ||||| | || || | || | || |||||||| || ||||| ||||||| Sbjct 20388 TTCCACCACGCAGACGAAGGACGAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCG 20329 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || || || ||||||||||||| || || ||| |||| || | ||||||||| || Sbjct 20328 AGAGCGTGCGGCCGTCCTCCAGCTGCTTTCCGGCAAAAATGAGACGCTGCTGGTCGGGGG 20269 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | || |||||||| |||||| ||||| | | ||| || || | ||| Sbjct 20268 GAATACCCTCCTTGTCCTGGATCTTCGACTTCACGTTGTCGATCGTGTCCGACGACTCAA 20209 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || || ||||| || || | || ||||| || || ||||| Sbjct 20208 CCTCCAGCGTGATCGTCTTACCCGTAAGGGTCTTGACGAAGATCTGCAT 20160 >seq4 Length=2308281 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 23809 ACGTTGCCCAGGTCGCCGACGTGTCGCTCCGCGGCGTCGGGCGCGCCGTGTCTCTGGCGG 23868 |||||||| ||||| |||||||| ||||| ||| || ||| | ||||| ||| | | Sbjct 1134624 ACGTTGCCGAGGTCACCGACGTGACGCTCGGCGTCGGTGGGACCTCCGTGGTTCTTACCG 1134683 Query 23869 GTGGGGTTAAAGTGCTCGCCAGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAA 23921 |||||| || ||| |||||| || || |||||||||||| |||| || || Sbjct 1134684 TGGGGGTTGAAATGCGAGCCAGCCGAAGTACAGCCGTTGCTGTTGTCACCAAA 1134736 >seq1 Length=4053335 Score = 82.4 bits (90), Expect = 6e-11 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || |||||||| || ||||| ||||| | ||||| || ||||||| ||||| ||||| Sbjct 1442477 GTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 1442418 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | || || | ||||||||| ||| | ||| |||||||| |||||| || Sbjct 1442417 GCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTG 1442358 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGT 21151 || | | ||| || || || ||| || | ||||||||||| ||||| Sbjct 1442357 ACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGAGTAATGGTCTTACCGGT 1442305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422259014733776