Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichosporon_20faecale_20[genbank_20GCA_5F001752585.1_202016-06-24] 32 sequences; 24,653,913 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq3 257 4e-63 seq6 120 7e-22 >seq3 Length=3676950 Score = 257 bits (284), Expect = 4e-63 Identities = 641/962 (67%), Gaps = 30/962 (3%) Strand=Plus/Plus Query 248782 CTGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACG 248841 || |||| |||||| ||||| | || || | ||| | | ||| | ||||| ||| Sbjct 2183647 CTTGACGCCGCGATCATCTACGACCGCGACTTTGCCTACAACTACTTCGGCTTCAAGACG 2183706 Query 248842 CTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATG 248901 || ||| || || |||||| || || |||||||||| || || ||||||||| Sbjct 2183707 CTCGAGCGCTCCTACCTCCTCCGCATCGACGGCAAGATCGCTGAGCGCCCCCAGCACATG 2183766 Query 248902 TTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTAC 248961 | ||||| || | || || || ||| || ||||| |||| || | ||||| ||| Sbjct 2183767 CTCATGCGTGTCTCCGTTGGTATCCACGGTGACGACATTGAGAAGGTCATTGAGACCTAC 2183826 Query 248962 ACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACC 249021 | | ||||| || |||| | || || ||| | || || ||||||||| | ||||| Sbjct 2183827 AACCTTATGAGCGAGCGCTACTTCACCCACGCCTCGCCCACTCTCTTCAACTCGGGTACT 2183886 Query 249022 GTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGC 249081 | || ||| || || ||||| ||| | |||||| | || ||||| |||||||| Sbjct 2183887 CCCCACGCCCAGATGTCGTCTTGCTTCCTTGTCGCCATGAAGGAGGACTCGATCGACGGC 2183946 Query 249082 ATTTATGACACGCTTAAACAGACG---GCGAAGATTTCTAAATTCGCGGGCGGAATCGGT 249138 || || ||||| || || ||| || |||| || || || || || |||||| Sbjct 2183947 ATCTACGACACTCTCAA---GACCTGTGCCCAGATCTCCAAGACTGCCGGTGGTATCGGT 2184003 Query 249139 CTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGT 249198 ||| | || ||||||||| || ||||| |||||||| || || || || | Sbjct 2184004 CTCCACATCCACAACATCCGTGCCAAGGGCTCGTACATTGCCGGAACCAACGGCTACTCG 2184063 Query 249199 GATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCC 249258 | |||||||| ||| | || || || || | || || | | | || |||||| Sbjct 2184064 AACGGTATCGTCCCCATGCTCCGTGCCTACGACGCTACTGCTCGTTACGTCGACCAGGGT 2184123 Query 249259 GG------GCGCCGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATA 249312 || ||||| ||| | ||||| || ||| | || ||||||||||| || Sbjct 2184124 GGCAACAAGCGCCC---GGGTGCCTTCGCTATCTATCTTGAGCCCTGGCACGCCGACATC 2184180 Query 249313 TTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTC 249372 || || ||||| ||| | |||||| |||| || ||| | | || ||||||||| Sbjct 2184181 TTCGACTTCCTCGACCTCCGTAAGAACCACGGAAAGGAGGAGGTTCGTGCCCGTGACCTC 2184240 Query 249373 TTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGG 249432 ||||||| ||| ||| |||||||| | |||||| || ||| || |||||||||| ||| Sbjct 2184241 TTCTACGCCCTCTGGATCTCCGACCTCTTCATGAAGCGTGTCGAGTCCGACGGCGACTGG 2184300 Query 249433 ACGCTTCTTTCTCCGTCCGACGCCCCGGACCTCATCGATCTACACGGCGCCGACTTCGAC 249492 || || | | ||| |||| ||| | |||| ||| | ||| | || ||||| Sbjct 2184301 ACCCTCATGTGCCCGGCCGAGTGCCCTGGCCTCGCCGACGTCCACTCTGAGGAGTTCGA- 2184359 Query 249493 CAAGC-CTATAAGAAATACGAATCCAACGGCATCG---GCAAGACAATCAAGGCTCGGAC 249548 |||| || ||| ||||| ||||| | ||||||| |||||||||| || Sbjct 2184360 GAAGCTGTACGAGAGCTACGAGCGTGCCGGCAAGGGTCGCAAGACTATCAAGGCTCAGAA 2184419 Query 249549 CCT---TTTTGCGAAGGTGGTGGAGTCCCAGATAGAGACAGGGGGGCCGTATTAT-TTGT 249604 || || || | | | ||| | |||| ||||| || || || | | || | | Sbjct 2184420 GCTCTGGTTCGCCA---TCCTTGAGGCTCAGACCGAGACCGGTGGTCCCT-TCATGCTCT 2184475 Query 249605 TCAAAGACGCGTGC-AACGCCAAGAGTAACCAACGGCATCTTGGTACCATCCGCTCGTCA 249663 ||| ||||| ||| ||| |||| ||||| | ||| || || |||||| ||||| Sbjct 2184476 ACAAGGACGC-TGCGAACCGCAAGTCCAACCAGCAGCACCTCGGCACCATCAAGTCGTCC 2184534 Query 249664 AATCTCTGTGCAGAGGTGATTCAATACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTG 249723 || ||||| | ||| | ||| | |||||||| || ||| ||||||| |||||||| Sbjct 2184535 AACCTCTGCACTGAGATCATTGAGTACTCGTCTCCCGATGAGGTTGCCGTGTGCAACCTT 2184594 Query 249724 GC 249725 || Sbjct 2184595 GC 2184596 >seq6 Length=1648939 Score = 120 bits (132), Expect = 7e-22 Identities = 234/346 (68%), Gaps = 30/346 (9%) Strand=Plus/Minus Query 254011 TGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAA 254070 |||| ||| ||||||| || ||||||||||||||||| || ||||| || || ||||| Sbjct 558736 TGCTCTTCTACGGTCCGCCGGGAACAGGCAAGACGTCTACGATCCTCGCCCTCGCCCGCC 558677 Query 254071 CCCTGTTGGGCGAGGGGAACATG---AGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACG 254127 || || ||| | || || | ||| ||||| |||||||| || || |||| Sbjct 558676 AACTCTTCGGCCCCG---ACCTGTTCAAGTCGCGTGTGCTGGAGCTGAATGCGTCCGACG 558620 Query 254128 AACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTC---CAAGATGTCG---- 254180 | ||||| | || |||||||| ||||||||||| ||| | | ||| | || Sbjct 558619 AGCGCGGCATCAGTGTAGTCCGCGAGAAGATCAAGACGTTCGCGCGCGAGACGCCGCGCC 558560 Query 254181 ---ATTTCGTCGTTCCAACC--CGGC------------TGTCCGCCTTTCAAGCTCGTGA 254223 | || ||| | | | |||| || ||||| | ||||||| | | Sbjct 558559 ACAACCCCGGCGTCGCGAGCGACGGCAAGGAGTACCCGTGCCCGCCGTACAAGCTCATCA 558500 Query 254224 TCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGG 254283 |||| || |||||||||| |||||| ||||| ||||| || ||| | || | |||| Sbjct 558499 TCCTCGATGAGGCGGACAGTATGACGCAGGACGCACAGTCTGCTCTCAGGCGCATCATGG 558440 Query 254284 AGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGT 254329 ||||| |||| | ||||| || || || ||||||||||| || Sbjct 558439 AGACGTACTCGAGGATCACGCGGTTCTGTCTCGTGTGCAACTATGT 558394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073765959755776