Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichosporon_20faecale_20[genbank_20GCA_5F001752585.1_202016-06-24] 32 sequences; 24,653,913 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3 262 4e-65 seq1 206 2e-48 seq9 107 2e-18 >seq3 Length=3676950 Score = 262 bits (290), Expect = 4e-65 Identities = 631/947 (67%), Gaps = 6/947 (1%) Strand=Plus/Minus Query 23017 GACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAAT 23076 || ||||||||||||||| ||||| ||||| ||||| || |||| |||||| | || Sbjct 2184609 GAGGGCGATCGAGGCAAGGTTGCACACGGCAACCTCATCGGGAGACGAGTACTCAATGAT 2184550 Query 23077 TTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCT-CTGGTTGCTTTTTCGAT 23135 || || || || ||| |||| || ||||| | | ||| ||||||| || || | Sbjct 2184549 CTCAGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGT-GCTGCTGGTTGGACTTGCGGT 2184491 Query 23136 T-GCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATC 23194 | ||| | ||||||||||||||| | || || |||||| ||| | ||| | ||| Sbjct 2184490 TCGCA-GCGTCCTTGTAGAGCATGAAGGGACCACCGGTCTCGGTCTGAGCCTCAAGGATG 2184432 Query 23195 GCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTT 23253 || ||| | ||||||| | | | ||| || ||| ||| | |||||| | Sbjct 2184431 GCGAACCAGAGCTTCTGAGCCTTGATA-GTCTTGCGACCCTTGCCGGCACGCTCGTAGCT 2184373 Query 23254 TTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGG 23313 | ||||| | || || || || || |||||| ||||| || | | ||| Sbjct 2184372 CTCGTACAGCTTCTCGAACTCCTCAGAGTGGACGTCGGCGAGGCCAGGGCACTCGGCCGG 2184313 Query 23314 ACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCA 23373 |||||||| |||| ||| || || || |||| || || || | ||||| Sbjct 2184312 GCACATGAGGGTCCAGTCGCCGTCGGACTCGACACGCTTCATGAAGAGGTCGGAGATCCA 2184253 Query 23374 TAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATC 23433 || |||||||| || || ||||| || |||||||| || ||| |||||| | || Sbjct 2184252 GAGGGCGTAGAAGAGGTCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTACGGAGGTC 2184193 Query 23434 CAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCT 23493 | ||||| || | ||| || ||||| ||||| || || | || || || ||||| | Sbjct 2184192 GAGGAAGTCGAAGATGTCGGCGTGCCAGGGCTCAAGATAGATAGCGAAGGCACCCGGGCG 2184133 Query 23494 CTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCAC 23553 ||| ||||| ||||| ||||||||||| || || || ||| | | ||||| || || Sbjct 2184132 CTTGTTGCCACCCTGGTCGACGTAACGAGCAGTAGCGTCGTAGGCACGGAGCATGGGGAC 2184073 Query 23554 GAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTG 23613 || |||||| || |||| || || | ||| || || || || | |||||| Sbjct 2184072 GATACCGTTCGAGTAGCCGTTGGTTCCGGCAATGTACGAGCCCTTGGCACGGATGTTGTG 2184013 Query 23614 AACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTC 23673 | ||||| ||| || || ||| | | || || ||| || || || |||||||| Sbjct 2184012 GATGTGGAGACCGATACCACCGGCAGTCTTGGAGATCTGGGCACAGGTCTTGAGAGTGTC 2183953 Query 23674 GTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGC 23733 ||||||||| ||||| |||||| || | ||||| | ||| || || ||||| || || Sbjct 2183952 GTAGATGCCGTCGATCGAGTCCTCCTTCATGGCGACAAGGAAGCAAGACGACATCTGGGC 2183893 Query 23734 TTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACAT 23793 | ||| ||| | | ||| || || || |||||| || ||||| | | ||| Sbjct 2183892 GTGGGGAGTACCCGAGTTGAAGAGAGTGGGCGAGGCGTGGGTGAAGTAGCGCTCGCTCAT 2183833 Query 23794 TAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCG 23853 || ||||| || || ||| | |||||||| || ||||| ||||| | || ||| || Sbjct 2183832 AAGGTTGTAGGTCTCAATGACCTTCTCAATGTCGTCACCGTGGATACCAACGGAGACACG 2183773 Query 23854 CATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACG 23913 ||| | ||||| || || | ||| | | ||||| || || || || || || Sbjct 2183772 CATGAGCATGTGCTGGGGGCGCTCAGCGATCTTGCCGTCGATGCGGAGGAGGTAGGAGCG 2183713 Query 23914 TTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGT 23960 | | ||| || || || || |||| ||| |||||| || |||| Sbjct 2183712 CTCGAGCGTCTTGAAGCCGAAGTAGTTGTAGGCAAAGTCGCGGTCGT 2183666 >seq1 Length=4840925 Score = 206 bits (228), Expect = 2e-48 Identities = 552/831 (66%), Gaps = 17/831 (2%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| ||||| | || ||||| ||||||| ||| || | |||| Sbjct 903036 ATCTGGCAGATGTACAAGAAGGCGCAGGCTTCGTTCTGGACCGCCGAGGAGATCAACCTC 902977 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 | || || ||| ||||| | || || || ||| | | || || | Sbjct 902976 GCCCCCGACCTCCACGACTGGGACAACAAACTGAACGACAACGAGCGCTACTTCATCGAG 902917 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 |||||| | || || |||||||| || || ||||| || |||||||| | ||||| | Sbjct 902916 CACGTGCTCGCATTCTTCGCCGCGTCGGACGGTATCGTCAACGAGAACCTCGTCGAGCGC 902857 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGA-GATGCTTTTACGGATTTCAAGTGGCCAT 57805 || | || || || | | ||||| | || | || ||||| || || | || Sbjct 902856 TTCTGCGGTGAGGTCCAGATCTCCGAGGCCAAGACG-TTCTACGGCTTCCAGATCATGAT 902798 Query 57806 TGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGA 57865 || ||| | || || || | ||| ||||| || ||||| |||||| | ||||||| Sbjct 902797 GGAGAACATCCACTCGGAGACGTACTCGCTCCTGATCGACACGTACATCCGCGACAACGC 902738 Query 57866 CGAGAAAC-GTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAG 57924 | | ||| |||||| | || ||||| || || ||| ||| |||||||| | Sbjct 902737 CCGCCGGCAGTAC-CTGTTCCAGGCCATCGAGACCATCCCCTGCATCAAGAAGAAGGCCG 902679 Query 57925 AGTGGTCAATCAAATGGATAAAAAGCGCCACGG--CCACGTTCGCCGAGAGGCTAATCGC 57982 | ||| | || ||||| | ||| | | |||||| |||| | || ||||| Sbjct 902678 ACTGGGCTCTCCGCTGGATCTC--GGACCAGCGTTCGTCGTTCGGCGAGCGCCTCATCGC 902621 Query 57983 GTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAA 58042 |||||||||||||| ||||| ||||| || ||| || ||| | || || ||| | || Sbjct 902620 CTTCGCCGCCGTCGAGGGTATCTTCTTCTCTGGCTCGTTCGCGTCCATCTTCTGGCTCAA 902561 Query 58043 GAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGG 58102 ||| |||||||| ||||||||||| ||||| |||||| | || |||||||||||||| Sbjct 902560 GAAGCGCGGCCTCATGCCCGGCCTCACGTTCTCGAACGAGCTCATCTCGCGCGACGAGGG 902501 Query 58103 TCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCG-ACGCGGG 58161 || || || || ||||| ||||| | | | | ||| | | ||| || | | Sbjct 902500 CCTGCACACCGACTTTGCCTGCCTGCTCTTCACGCACCTCCGCCGCCGCCCGCACCCCGA 902441 Query 58162 ATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAG 58221 || ||| | || |||| ||||| ||| |||||| | ||||| ||||||| | Sbjct 902440 CACG-ATCAACAAGATCATCAAGGAGGCCGTCAAGATCGAGCAGGAGTTCCTCACCGAGG 902382 Query 58222 CCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTG 58281 |||| || ||| | | |||| |||||| | | |||| ||||||| ||||||| Sbjct 902381 CCCTCCCCGTGTCGCTCATCGGCATGAACGCCAAGCTCATGTGCCAGTACATCGAGTTTG 902322 Query 58282 TTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACAACACGAAAAATCC 58339 | || ||| | || | ||| || | |||| ||| | ||| || || || Sbjct 902321 TCGCGGACCGTCTGCTCGTCGCCCTTGGCAACGAGAAGGTC--TGGAACTCGTCCAACCC 902264 Query 58340 GTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGA 58390 || || || ||| | ||||||||||| |||||||| | ||||| ||||| Sbjct 902263 CTTCGACTTCATGGAGATGATCTCGCTCCAGGGCAAGGCCAACTTCTTCGA 902213 Score = 95.1 bits (104), Expect = 1e-14 Identities = 208/304 (68%), Gaps = 11/304 (4%) Strand=Plus/Minus Query 57834 CTACTCATCGATACGTACGTGAAGGACAACGACGAGAA--ACGTAGACTGTTCAACGCGA 57891 || || ||||| || || ||| | ||||| |||||||| || | |||||||| | | Sbjct 1301297 CTCCTGATCGAGACATATGTGCAAGACAAGGACGAGAAGGACTTC--CTGTTCAAGGGAA 1301240 Query 57892 TCGA-AACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGC 57950 | || |||| | || || ||| |||||||| || ||| | || || | || | Sbjct 1301239 TGGAGAACATTCCCTGC-ATCCAGAAGAAGGCCGACTGGGCGATGAAGTACATCACCGAT 1301181 Query 57951 GCCACGGCCACGTTCGCCGAGAGGCTA-ATCGCGTTCGCCGCCGTCGAAGGTATATTCTT 58009 | | || ||| |||| | ||| |||||||||||| || || || || ||||| Sbjct 1301180 GATGTGCCC---TTC-CCGATACGCTTGATCGCGTTCGCCTGTGTGGAGGGCATTTTCTT 1301125 Query 58010 TTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGAC 58069 ||||| ||||| ||||| || ||| ||||||| |||||||| ||| || |||| Sbjct 1301124 CTCGGGGTCATTTGCAGCAATCTTCTGGCTGAAGAAGCGCGGCCTCATGGGAGGTTTGAC 1301065 Query 58070 GTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAAT 58129 || |||||| | || || ||||||||||| || || || || || ||||| | Sbjct 1301064 CTTCTCGAACGAGCTTATCAGCCGAGACGAGGGTCTGCACACCGACTTCGCCTGCCTGCT 1301005 Query 58130 GTAC 58133 |||| Sbjct 1301004 GTAC 1301001 >seq9 Length=896563 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||||| || ||||| || ||||| |||| || || | || Sbjct 20504 ATGCAGATCTTTGTCAAGACTCTTACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCG 20563 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||| ||| | || ||||||||| Sbjct 20564 GACACGATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCCGACCAG 20623 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || || ||||| || | || ||| | || || ||| || ||| Sbjct 20624 CAGCGTCTCATCTTTGCCGGCAAGCAACTCGAGGACGGTCGCACCCTGTCCGACTACAAC 20683 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || ||||| ||||| || || ||| | ||| | || |||| Sbjct 20684 ATCCAGAAGGAGTCGACCCTTCACCTCGTCCTTCGTCTGCGCGGTGGTA 20732 Score = 100 bits (110), Expect = 3e-16 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||||||||| || || ||||| ||| | || || || | ||| Sbjct 20732 ATGCAGATCTTCGTCAAGACTCTGACGGGTAAGACGATTACCCTTGAGGTCGAGTCTTCC 20791 Query 31253 GACAGTGTCGAAACGGTCAAACAGAG-AATAGC--GGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| |||| | || | |||| || | | ||||||||| || | || || ||| Sbjct 20792 GACACGATCGACAACGTGA---AGAGCAAGATCCAGGACAAGGAGGGTATTCCCCCTGAC 20848 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| || || ||||| || || ||| | || ||| | || | || || Sbjct 20849 CAGCAGCGCCTTATCTTCGCGGGTAAGCAGCTTGAGGACGGTCGCACCCTCTCGGACTAC 20908 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| || || ||||||||||| || || || | ||| | || |||| Sbjct 20909 AACATTCAGAAGGAGTCGACTCTTCACCTTGTGCTCCGCCTGCGTGGTGGTA 20960 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 31208 AAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACG 31267 ||||| || || ||||| || |||||| | || ||||| ||||||||| |||| | Sbjct 20242 AAGACCCTCACCGGCAAGACCATCACCCTTGAGGTTGAGTCGTCCGACACCATCGACAAC 20301 Query 31268 GTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTC 31327 ||||| || || ||||||||||||| | || ||||||||||||||||| || ||| Sbjct 20302 GTCAAGTCGAAGATCCAGGACAAGGAAGGCATCCCTCCCGACCAGCAGCGTCTCATTTTC 20361 Query 31328 GCTGGCAAACAGTTGGAAGAC 31348 || || || ||| | || ||| Sbjct 20362 GCGGGAAAGCAGCTCGAGGAC 20382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766221693440