Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichosporon_20faecale_20[genbank_20GCA_5F001752585.1_202016-06-24] 32 sequences; 24,653,913 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1 163 3e-35 seq9 111 2e-19 seq3 84.2 2e-11 >seq1 Length=4840925 Score = 163 bits (180), Expect = 3e-35 Identities = 499/757 (66%), Gaps = 17/757 (2%) Strand=Plus/Minus Query 52080 AAATTAAACGATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCC 52139 ||| | ||||| |||||||||| || ||| |||||||| | || ||||||||||| | Sbjct 902949 AAACTGAACGACAACGAGCGCTACTTCATCGAGCACGTGCTCGCATTCTTCGCCGCGTCG 902890 Query 52140 GATAGCATCGTGAACATTAACCTCATCGAGTACATGCAGCGGAACGTTCCGGAACTC-GA 52198 || | ||||| ||| |||||| ||||| | | | |||| | ||| || ||| || Sbjct 902889 GACGGTATCGTCAACGAGAACCTCGTCGAGCGCTT-CTGCGGTGAGGTCCAGATCTCCGA 902831 Query 52199 GGCGCAATACTTT-TATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACA 52257 ||| ||| || || || || || | | || ||| | | ||| |||||| |||| Sbjct 902830 GGC-CAAGACGTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCGGAGACGTACT 902772 Query 52258 ATCTGCTCATTGAGCAGCTGATAAAAGATGA-GCACGAGCGCGACACGCTGCTGAATGCG 52316 || || || || | || || | || || || || ||| | | || Sbjct 902771 CGCTCCTGATCGACACGTACATCCGCGACAACGCCCGCCGGCAGTAC-CTGTTCCAGGCC 902713 Query 52317 TTCGAGCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGC 52376 ||||| | | || ||| | || ||||| | ||||| | |||||| | | Sbjct 902712 ATCGAGACCATCCCCTGCATCAAGAAGAAGGCCGACTGGGCTCTCCGCTGGATCTCGGAC 902653 Query 52377 GACACCG--CCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttt 52434 || || | || | | ||||||| | | ||||||||| |||||||| | || | Sbjct 902652 --CAGCGTTCGTCGTTCGGCGAGCGCCTCATCGCCTTCGCCGCCGTCGAGGGTATCTTCT 902595 Query 52435 tttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGA 52494 | || ||| || || ||||||| | | || | | ||| | ||||||||||| | Sbjct 902594 TCTCTGGCTCGTTCGCGTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCA 902535 Query 52495 CGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCT 52554 ||||| |||||| | || ||||||||||| || |||||||| |||||||| ||||| Sbjct 902534 CGTTCTCGAACGAGCTCATCTCGCGCGACGAGGGCCTGCACACCGACTTTGCCTGCCTGC 902475 Query 52555 ACTACAAG-ACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAG 52613 || || | || || ||| | | | ||||||||| | || ||||| Sbjct 902474 TCTTCACGCACCTCCGCCGCCGCCC----GCACCCCGACACGATCAACAAGATCATCAAG 902419 Query 52614 GAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGC 52673 ||||| || ||||| ||||||| | || | || || || || ||| | ||| Sbjct 902418 GAGGCCGTCAAGATCGAGCAGGAGTTCCTCACCGAGGCCCTCCCCGTGTCGCTCATCGGC 902359 Query 52674 ATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAG 52733 |||||||| || ||||||| |||||||||||||||| ||||| |||||| | || | Sbjct 902358 ATGAACGCCAAGCTCATGTGCCAGTACATCGAGTTTGTCGCGGACCGTCTGCTCGT-CGC 902300 Query 52734 CTCGGGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTC 52792 | |||| | | ||| || ||| | ||| || || || || ||| | | || || Sbjct 902299 CCTTGGCAACGAGAAGGTCTGGAACTCGTCCAACCCCTTCGACTTCATGGAGATGATCTC 902240 Query 52793 GCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTC 52829 ||| |||||||| ||||||| |||||| ||| ||| Sbjct 902239 GCTCCAGGGCAAGGCCAACTTCTTCGAGTCGCGCGTC 902203 >seq9 Length=896563 Score = 111 bits (122), Expect = 2e-19 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || | || | | | |||||||| || |||||||||||| | Sbjct 20730 CCACCGCGCAGACGAAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 20671 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||||||||| || |||| | |||| |||||||| ||||| || || Sbjct 20670 AGGGTGCGACCGTCCTCGAGTTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGG 20611 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | || | || | ||| || | ||||| | ||||| | Sbjct 20610 ATGCCCTCCTTGTC-CTGAATCTTGGACTTGACGTTG-TCGATCGTGTCCGAGGACTCGA 20553 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| || | || || || || ||||| || ||||| |||||||| Sbjct 20552 CCTCGAGAGTGATGGTCTTGCCGGTAAGAGTCTTGACAAAGATCTGCAT 20504 Score = 105 bits (116), Expect = 7e-18 Identities = 143/196 (73%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | ||||| |||||||| || || || | | Sbjct 21153 GACTCCTTCTGGATGTTGTAGTCCGAGAGCGTACGTCCATCCTCGAGCTGCTTTCCAGCA 21094 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || ||||| ||||| ||||| || || || ||||| ||| | || | || | Sbjct 21093 AAGATCAGGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTC-CTGAATCTTGGACTTGAC 21035 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | |||||| | |||||| ||||| | ||| | ||| ||||| || || || | Sbjct 21034 GTTG-TCGATGGTGTCCGACGACTCAACCTCCAGCGTGATCGTCTTACCCGTGAGGGTCT 20976 Query 138599 TTACAAAAATCTGCAT 138614 | ||||| |||||||| Sbjct 20975 TCACAAAGATCTGCAT 20960 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| |||||||||||||| | || || |||||| || || ||||| | Sbjct 20925 GACTCCTTCTGAATGTTGTAGTCCGAGAGGGTGCGACCGTCCTCAAGCTGCTTACCCGCG 20866 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| ||||| || || ||||| || ||||| ||| || || | Sbjct 20865 AAGATAAGGCGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTTGCTCTTCACG 20806 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| ||||| ||||| | || | ||| ||||| |||||||| || Sbjct 20805 TTGTCGATCGTGTCGGAAGACTCGACCTCAAGGGTAATCGTCTTACCCGTCAGAGTCTTG 20746 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 20745 ACGAAGATCTGCAT 20732 >seq3 Length=3676950 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 57300 GGCCTCGACGTTGCCCAAGTCGCCGACGTGCCGCACGGCCGCGTTGGGAGCGCCGTGTTC 57359 || || ||||||||| | ||| |||||||| ||| |||| || ||||| | ||||| | Sbjct 1271730 GGTCTTGACGTTGCCGAGGTCACCGACGTGACGCTCGGCGTCGGTGGGACCTCCGTGGTT 1271671 Query 57360 GCTGCCGGTGGGGTTAAAGTGCTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCCGAA 57419 | || ||||||||| ||| || || || || |||||||||||| |||| ||||| Sbjct 1271670 CTTACCATGGGGGTTAAAATGCGAACCAGCAGAAGTACAGCCGTTGCTGTTGTCACCGAA 1271611 Query 57420 C 57420 | Sbjct 1271610 C 1271610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262201495040