Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichosporon_20faecale_20[genbank_20GCA_5F001752585.1_202016-06-24] 32 sequences; 24,653,913 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1 127 2e-24 seq9 116 4e-21 seq2 96.9 3e-15 seq3 82.4 7e-11 >seq1 Length=4840925 Score = 127 bits (140), Expect = 2e-24 Identities = 287/431 (67%), Gaps = 13/431 (3%) Strand=Plus/Minus Query 47145 ATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTAC 47204 ||||| |||||| ||||||||| |||||||||| ||| || ||| | || || | Sbjct 902625 ATCGCCTTCGCCGCCGTCGAGGGTATCTTCTTCTCTGGCTCGTTCGCGTCCATCTTCTGG 902566 Query 47205 ATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGAC 47264 | || | || | ||||||||||||||||| |||||||| |||||| | ||| Sbjct 902565 CTCAAGAAGCGCGGCCTCATGCCCGGCCTCACGTTCTCGAACGAGCTCATCTCGCGCGAC 902506 Query 47265 GAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACA-ACACTAGAGTCGATCAAAAGTT 47323 || |||||||||||| |||||||||| || || || ||| || | Sbjct 902505 GAGGGCCTGCACACCGACTTTGCCTGCCTGCTCTTCACGCAC--------CTCCGCCGCC 902454 Query 47324 GGACGTGCC----CACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGT 47379 | || || ||| ||| | | || | || |||||| || ||| ||||| Sbjct 902453 GCCCGCACCCCGACACGATCAACAAGATCATCAAGGAGGCCGTCAAGATCGAGCAGGAGT 902394 Query 47380 TTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGT 47439 | || ||||||| || |||| || | | || |||||||| || | ||| | ||| Sbjct 902393 TCCTCACCGAGGCCCTCCCCGTGTCGCTCATCGGCATGAACGCCAAGCTCATGTGCCAGT 902334 Query 47440 ACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACA 47499 ||||||| |||||||| ||||| |||||||| || | ||| | | || Sbjct 902333 ACATCGAGTTTGTCGCGGACCGTCTGCTCGTCGCCCTTGGCAACGAGAAGGTCTGGAACT 902274 Query 47500 CCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCG 47559 | || || ||||| || ||| | | || |||||| |||||||| ||||||| |||| Sbjct 902273 CGTCCAACCCCTTCGACTTCATGGAGATGATCTCGCTCCAGGGCAAGGCCAACTTCTTCG 902214 Query 47560 AGAAGCGCGTC 47570 || ||||||| Sbjct 902213 AGTCGCGCGTC 902203 >seq9 Length=896563 Score = 116 bits (128), Expect = 4e-21 Identities = 169/235 (72%), Gaps = 3/235 (1%) Strand=Plus/Minus Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939 |||| |||| || || | || | |||| || | ||||||||| || || || ||||| Sbjct 21192 TACT-CTCCTCCACGGAGACGAAGAACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTA 21134 Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999 || | ||| || ||| || ||||| |||||||| |||||| |||||||| || Sbjct 21133 GTCCGAGAGCGTACGTCCATCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTC 21074 Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTAC 127058 |||||| || |||||||||||| || || ||||| |||| |||| |||||||| Sbjct 21073 GGGAGGGATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTG-TCGATGGTGTCCGACG 21015 Query 127059 TCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| || || | || | ||| || || || || || || ||||| |||||||| Sbjct 21014 ACTCAACCTCCAGCGTGATCGTCTTACCCGTGAGGGTCTTCACAAAGATCTGCAT 20960 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| || |||||| || || || || || || Sbjct 20700 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCGTCCTCGAGTTGCTTGCCG 20641 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | |||||||| ||||| || ||||||||||||||| || || |||| Sbjct 20640 GCAAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTG 20581 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| ||||||| |||||| |||| || | || |||||||| ||||| Sbjct 20580 ACGTTG-TCGATCGTGTCCGAGGACTCGACCTCGAGAGTGATGGTCTTGCCGGTAAGAGT 20522 Query 127096 TTTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 20521 CTTGACAAAGATCTGCAT 20504 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||| ||||| || | |||||| || || ||||| || || Sbjct 20928 GTCGACTCCTTCTGAATGTTGTAGTCCGAGAGGGTGCGACCGTCCTCAAGCTGCTTACCC 20869 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | |||||||| || || || || |||||||||||| ||| || ||| Sbjct 20868 GCGAAGATAAGGCGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTTGCTCTTC 20809 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| ||||| | | |||||| || | ||| | ||| || || |||||||| Sbjct 20808 ACGTTG-TCGATCGTGTCGGAAGACTCGACCTCAAGGGTAATCGTCTTACCCGTCAGAGT 20750 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 20749 CTTGACGAAGATCTGCAT 20732 >seq2 Length=4481979 Score = 96.9 bits (106), Expect = 3e-15 Identities = 129/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| | ||||| || || ||||| || || Sbjct 720179 GTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 720120 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | |||||||| ||||| || ||||||||||||||| ||| ||| |||| Sbjct 720119 GCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTG 720060 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAG 127092 | |||| |||| |||||||| |||||| |||| || | || || ||||| || Sbjct 720059 ACGTTG-TCGATGGTGTCCGAGGACTCGACCTCGAGAGTAATGGTCTTACCGGTGAG 720004 >seq3 Length=3676950 Score = 82.4 bits (90), Expect = 7e-11 Identities = 126/177 (71%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || | ||||| || || ||||| || ||| Sbjct 1426956 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCA 1427015 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | |||||||| || || || || |||||||||||| ||| || |||| Sbjct 1427016 GCGAAGATGAGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTG 1427075 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAG 127092 | |||| |||| |||||| | |||||| || | ||| | || ||||| ||||| Sbjct 1427076 ACGTTG-TCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAG 1427131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500609799680