Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichosporon_20faecale_20[genbank_20GCA_5F001752585.1_202016-06-24] 32 sequences; 24,653,913 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1 233 3e-55 seq3 147 3e-29 seq5 89.7 7e-12 >seq1 Length=4840925 Score = 233 bits (258), Expect = 3e-55 Identities = 364/510 (71%), Gaps = 18/510 (4%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||| |||| || || ||||||||||||||| || ||| Sbjct 903037 GATCTGGCAGATGTAC-AAGAAGGCGCAGGCTTCGTTCTGGACCGCCGAGGAGATCAACC 902979 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTCG---CTGAGCGACGACGAGCGCCATTTCATCA 1455891 ||| | ||||| | |||||| |||| |||| |||||||| | |||||| Sbjct 902978 TCGCCCCCGACCTCCACGACTGGGACAACAAACTGAACGACAACGAGCGCTACTTCATCG 902919 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||||||| ||||| || || |||||| || || ||||| ||||||||| | || Sbjct 902918 AGCACGTGCTCGCATTCTT-CGCCGCGTCGGACGGTATCGTCAACGAGAACCTCGTCGAG 902860 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| |||||||| | | ||||| ||| ||||| ||||||||| Sbjct 902859 CGCTTCTGCGGTGAGGTCCAGATCTCCGAGGCCAAGACGTTCTACGGCTTCCAGATCATG 902800 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGAC--- 1456068 || || ||||||||||| || || |||||||||||||||||||| ||| || ||| Sbjct 902799 ATGGAGAACATCCACTCGGAGACGTACTCGCTCCTGATCGACACGTACATCCGCGACAAC 902740 Query 1456069 -CCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAA 1456127 || | || | | |||| || | |||||||| || | || | | | ||| || Sbjct 902739 GCCCGCCG----GCAGTACCTGTTCCAGGCCATCGAGACCATCCCCTGCATCAAGAAGAA 902684 Query 1456128 GGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTC 1456187 |||||||||||| | |||||| | || | ||| | || | |||||| ||| Sbjct 902683 GGCCGACTGGGCTCTCCGCTGGATCTCGGACCAGCGT-TCGTCG-TTCGGCGAGCGCCTC 902626 Query 1456188 GTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CCATCTTTTG 1456245 ||| ||| ||||| |||||||| ||||| ||||| ||| ||| ||| ||||||| || Sbjct 902625 ATCGCCTTCGCCGCCGTCGAGGGTATCTTCTTCTCTGGCTCGTTC-GCGTCCATCTTCTG 902567 Query 1456246 GCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||||||||||||||||||||||||| || Sbjct 902566 GCTCAAGAAGCGCGGCCTCATGCCCGGCCT 902537 Score = 197 bits (218), Expect = 2e-44 Identities = 244/327 (75%), Gaps = 10/327 (3%) Strand=Plus/Minus Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGACCGACG 1456511 ||||| ||||||||||| ||||||| |||| ||| | | ||| ||||| Sbjct 902498 TGCACACCGACTTTGCCTGCCTGCTCTTCACGCACCTCCGCCGCCGCCCGCACCCCGACA 902439 Query 1456512 TGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGC 1456571 | ||| |||||||| ||||||||| |||||||| | ||||| ||| |||| | | Sbjct 902438 CGATCAACAAGATCATCAAGGAGGCCGTCAAGATCGAGCAGGAGTTCCTCACCGAGGCCC 902379 Query 1456572 TGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGT 1456631 | || ||| ||||||||||||||||||||| |||||||||||||||||| | | ||||| Sbjct 902378 TCCCCGTGTCGCTCATCGGCATGAACGCCA-AGCTCATGTGCCAGTACATCG-AGTTTGT 902321 Query 1456632 CGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGA---CGGCCAACC 1456688 ||| ||||| ||||||| || || ||| | |||||| || ||| || |||||| Sbjct 902320 CGCGGACCGTCTGCTCGTCGCCCTTGGCAAC-GAGAAGGTCT---GGAACTCGTCCAACC 902265 Query 1456689 CGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG 1456748 | ||| | |||||| ||||||||||| |||||||| ||||||| |||||| |||| Sbjct 902264 CCTTCGACTTCATGGAGATGATCTCGCTCCAGGGCAAGGCCAACTTCTTCGAGTCGCGCG 902205 Query 1456749 TGGC-GAGTACGCCAAGGCCGGCGTCA 1456774 | | | ||| ||||| | ||||||| Sbjct 902204 TCTCGGCCTACTCCAAGTCGGGCGTCA 902178 Score = 141 bits (156), Expect = 1e-27 Identities = 179/245 (73%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 ||||||||||| | ||||||||||| ||||||||||| |||||| |||| | | Sbjct 3527668 TCGTACTCGTCTTACATCTACAAGGTCCTCAAGCAGGTCCACCCCGACACCGGT-----A 3527614 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 || || |||||| ||||| | || | |||||||| ||| |||||| |||| || ||| Sbjct 3527613 TC-TCGAACAAGGCCATGGCCATTCTCAACTCGTTCGTCGCCGACATCTTCGAGCGTATC 3527555 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | ||||||||| || ||| | |||| | ||| || ||| |||| ||| Sbjct 3527554 GCTACCGAGGCCTCCAAGCTCGCGTCGTACAACCACCGCTCGACCATCTCGTCGCGTGAG 3527495 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 |||||||||||||| || || ||| | | ||| || || ||| ||||||| |||| ||| Sbjct 3527494 ATCCAGACCGCCGTCCGTCTCATCCTCCCCGGAGAGCTTTCCAAGCACGCCATCTCTGAG 3527435 Query 725136 GGCAC 725140 ||||| Sbjct 3527434 GGCAC 3527430 Score = 123 bits (136), Expect = 4e-22 Identities = 233/338 (69%), Gaps = 6/338 (2%) Strand=Plus/Minus Query 332876 CGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGA-CGTGTTGCAGGC 332934 |||| || || || ||| ||| | | |||||||| | ||| | | ||||||| || Sbjct 3534579 CGCAAAATAGCGCAGCGGGACTGGATCGGCTCGATGATC-TTGTTGCTCATGTTGCACGC 3534521 Query 332935 CAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTGGGC 332994 || || || || ||||| || | | | ||||| || || || ||||| || || Sbjct 3534520 GAGCGCGAAGCGGGTCGTGTTCGAGTAAATCTCCATCGTGCGGCGCAGCGCCTGCTGCGC 3534461 Query 332995 CGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGGCAG 333054 ||| || | || ||| ||||||||||||||||| |||||||| |||||| |||| | Sbjct 3534460 TCCCGCGGTCATGCTGTCCGCCTCGTCGAGGATGATCATCTTGTGCCGCCCGGGCGG--G 3534403 Query 333055 ATCAACCCTTTTCGAGGCGTG--GTGTTTGATGATCTTGCGCACGACGTCCACGCCGCGC 333112 | | | | || || ||| | | ||||| | || ||||| ||||| | ||| ||| Sbjct 3534402 AGCGTCACCTTGCGCTGCGCGAAGGACTTGATCTTGTTCCGCACCACGTCGATGCCACGC 3534343 Query 333113 TCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAGAGGACGCGC 333172 |||||||| ||||| || || |||||| | ||| | || | |||| ||| || || Sbjct 3534342 TCGTCCGAGGCGTTCAGCTCAAGCACGCCTTCGCGGTACGCGTCGCCCAGGAGTGCGTGC 3534283 Query 333173 GCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGG 333210 || ||||| ||| ||| |||||||| | ||||| Sbjct 3534282 GCGAGGCAGTGGATTGACGTCGTCTTGCCGATACCGGG 3534245 Score = 89.7 bits (98), Expect = 7e-12 Identities = 141/199 (71%), Gaps = 10/199 (5%) Strand=Plus/Minus Query 1601279 AGCGGCACCTGCGGGTAGCACAGGGCGTGCGACACCGTGTCGATG-GCA--TGGTCGGCG 1601335 ||||| |||||||||| | ||| || || || |||||| ||| ||| |||| | Sbjct 2477997 AGCGGGGACTGCGGGTAGTAGAGGATGTTCGCCATCGTGTCCATGCGCAGTTGGTAGTTC 2477938 Query 1601336 TTGAGC--GACACGACGGCCTTGCTCTGCTTGCCCATGGCCGTCTGGTAGATGTTGCGCG 1601393 |||| || || || || |||||| ||||| |||| ||||||| |||| |||| Sbjct 2477937 GTGAGGTGGATAC-----CCATGGCCTGCTTACCCATCGCCGACTGGTAGGTGTTACGCG 2477883 Query 1601394 GCGCCTGGTTGTGGTTGGAAAACGGGATGATGGACGCGCAGGCGCCCAGCATGAGCAGCG 1601453 ||| ||||||||||| || ||||| | || ||||| ||| | || || || | || Sbjct 2477882 GCGACTGGTTGTGGTCGGGGAACGGAACAATAGACGCACAGACACCGAGAATCATACTCG 2477823 Query 1601454 GGTGGACCTCGACGTGCGT 1601472 |||| | ||| | |||||| Sbjct 2477822 GGTGAATCTCCATGTGCGT 2477804 >seq3 Length=3676950 Score = 147 bits (162), Expect = 3e-29 Identities = 342/513 (67%), Gaps = 21/513 (4%) Strand=Plus/Plus Query 259673 GTCGCCGAGCACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTAC 259732 ||| || || ||||||||| || ||||| || ||| | ||| ||| ||||||| |||| Sbjct 2183626 GTCTCCAAGAACAAGGAGGCTCTTGACGCCGCGATCATCTACGACCGCGACTTTGCCTAC 2183685 Query 259733 TCGTACTTTGGTCTGGCGAC-CTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTGT 259791 ||||| || | ||| || | || | |||||||| | | || | | Sbjct 2183686 AACTACTTCGGCTTCAAGACGCTCGAGC-GCTCCTACCTCCTCCGCATCGACGGCAAGAT 2183744 Query 259792 CGTCGAGCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGA 259851 || ||||| |||||| | ||||||||||||||| || |||| | || || ||| Sbjct 2183745 CGCTGAGCGCCCCCAGCACATGCTCATGCGTGTCTCCGTTGGTATCCACGG---TGACGA 2183801 Query 259852 CGTCGACAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTGTT 259911 | | || || | | ||| |||||| | ||| ||| | || Sbjct 2183802 CATTGAGAAGGTCATTGAG------------ACCTACAACCTTATGAGCGAGCGCTACTT 2183849 Query 259912 CACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTG 259971 |||| || ||||||| ||||| || | || || || | | | |||| ||||| || Sbjct 2183850 CACCCACGCCTCGCCCACTCTCTTCAACTCGGGTACTCCCCACGCCCAGATGTCGTCTTG 2183909 Query 259972 CTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTG 260031 ||| || | | |||||||| || |||||||| |||||||| ||||| |||||| || Sbjct 2183910 CTTCCTTGTCGCCATGAAGGAGGACTCGATCGACGGCATCTACGACACTCTCAAGACCTG 2183969 Query 260032 CGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCA--CACAAGGTGCGCGCC 260089 || | ||||||||| | ||||| || |||||| | || || ||||| | || ||| Sbjct 2183970 TGCCCAGATCTCCAAGACTGCCGGTGGTATCGGTCT--CCACATCCACAACATCCGTGCC 2184027 Query 260090 GCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGC 260149 |||| | ||| | || || ||||||||| | || ||||| | || |||||||| || Sbjct 2184028 AAGGGCTCGTACATTGCCGGAACCAACGGCTACTCGAACGGTATCGTCCCCATGCTCCGT 2184087 Query 260150 GTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 | | ||| || || || |||||||||||| Sbjct 2184088 GCCTACGACGCTACTGCTCGTTACGTCGACCAG 2184120 Score = 102 bits (112), Expect = 1e-15 Identities = 164/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 263177 TCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTGATATGGCGG 263236 ||||||| ||| |||||| || |||||| | | | || | || || | || | Sbjct 2185286 TCAAGGCCATCTACAAGACTGTCTGGGAGATCTCGCAGAAGGCGGTTATCGACCTCGCTG 2185345 Query 263237 CCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCGACCCGA 263296 ||||||| | | | |||||||| |||||||||||| | ||||||| |||| Sbjct 2185346 CCGACCGTGGAGCGTTCATCGACCAGTCGCAGTCGCTCAACATCCACCTCGCGAACCCCT 2185405 Query 263297 CGGCCGAG-AGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCAAGACTGGC 263355 || | | ||| |||| ||||||||| ||| | ||| ||||| |||||||| || Sbjct 2185406 CGTTCTCGCAGC-TCACCTCGATGCACTTCTACGGCTGGAAGCGCGGTCTCAAGACCGGT 2185464 Query 263356 ATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCGA 263408 ||||| || |||||||| || |||||||||||||| || ||||| |||| Sbjct 2185465 GCCTACTACCTCCGCACCCGTCCTGCTGCCAACGCCATCCAGTTCACGATCGA 2185517 Score = 98.7 bits (108), Expect = 1e-14 Identities = 309/482 (64%), Gaps = 12/482 (2%) Strand=Plus/Plus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || ||| ||||||| ||| ||||| || ||| || || || |||||||||||| || Sbjct 2184121 GGTGGCAACAAGCGCCCGGGTGCCTTCGCTATCTATCTTGAGCCCTGGCACGCCGACATC 2184180 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 || ||| || |||||| ||||||||||| || ||||| || | || || Sbjct 2184181 TTCGACTTCCTCGACCTCCGTAAGAACCACGG-AAAGGAGGAGG-----TTCGTGCCCGT 2184234 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967 || ||||| |||| ||| |||| | |||||| || ||| || | | | ||| | || Sbjct 2184235 GACCTCTTCTACGCCCTCTGGATCTCCGACCTCTTCATGAAGCGTGTCGAGTCCGACGGC 2184294 Query 261968 GACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGGCC 262027 |||||| | ||| | |||||| ||||| || ||||| ||| | | | || Sbjct 2184295 GACTGGACCCTCATGTGCCCGGCCGAGTGCCCTGGCCTCGCCGACGTCCACTCTGAGGAG 2184354 Query 262028 TTTGACGCCCTCTA--TGAGNNNNNNNNNNNNNNNNNNNNNNCGC-GGACCGTCGTGCCC 262084 || || || || ||| ||| ||| || | Sbjct 2184355 TTCGAGAAGCTGTACGAGAGCTACGAGCGTGCCGGCAAGGGTCGCAAGACTATCAAG--- 2184411 Query 262085 GCACGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATG 262144 || | || |||||| ||||| | | ||| || | ||||||||| |||| |||| Sbjct 2184412 GCTCAGAAGCTCTGGTTCGCCATCCTTGAGGCTCAGACCGAGACCGGTGGTCCCTTCATG 2184471 Query 262145 GTCTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG 262204 ||||||||||||| | |||| | |||||||||| |||| ||||||| | | Sbjct 2184472 CTCTACAAGGACGCTGCGAACCGCAAGTCCAACCAGCAGCACCTCGGCACCATCAAGTCG 2184531 Query 262205 GCCAACCTGTGCACCGAGATCGTCCAGTTTTCGTCGCCCACCGAGGCAAGTGTGTGCAAC 262264 ||||||| ||||| |||||| | ||| ||||| ||| |||| ||||||||| Sbjct 2184532 TCCAACCTCTGCACTGAGATCATTGAGTACTCGTCTCCCGATGAGGTTGCCGTGTGCAAC 2184591 Query 262265 CT 262266 || Sbjct 2184592 CT 2184593 Score = 96.9 bits (106), Expect = 5e-14 Identities = 133/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 724961 CAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCAC 725020 ||||||| ||||| | ||| ||||||| || || |||||| |||| ||||| | ||| Sbjct 1236665 CAACAAGGCCATGGCCATCCTGAACTCCTTCGTTGCCGACATCTTCGAGCGCATTGCCAC 1236724 Query 725021 CGAGGCCGGTCGC--CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 ||||||| ||| || ||| | |||| | ||| || || |||| |||||| Sbjct 1236725 CGAGGCC--TCGAAGCTCGCGTCGTACAACCACCGCTCGACTATTTCGTCGCGTGAGATC 1236782 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 ||||||||||| ||||||||| | | || || || | | |||||| |||| ||||| Sbjct 1236783 CAGACCGCCGTCCGCCTGATCCTTCCTGGAGAGCTCTCGAAGCACGCTATCTCTGAGGGA 1236842 Query 725139 ACCA 725142 |||| Sbjct 1236843 ACCA 1236846 >seq5 Length=1946847 Score = 89.7 bits (98), Expect = 7e-12 Identities = 143/200 (72%), Gaps = 9/200 (5%) Strand=Plus/Plus Query 1600576 CTCCATCATCTTGCCCATGGTCATGCGCGACGGGATGGCGTGCGGGTTGATCACAATGTC 1600635 ||| ||||||||||| | |||||||||||||||| |||||||||| || | ||||| Sbjct 1499941 CTCAATCATCTTGCCGACCGTCATGCGCGACGGGAATCCGTGCGGGTTCATGATGATGTC 1500000 Query 1600636 GGGCGTGGCACCGCCGCGAGGCGACCAGGGCATGTCCT-CGGTGGAGCG--CACGCTGCC 1600692 ||| | ||| | | | || | |||||||||| | | || || | || || Sbjct 1500001 GGGGCAGATACC-CTGGTCGTTGA--ACGGCATGTCCTGCTGCGGCACGATGAGGCCGCA 1500057 Query 1600693 CACGGTGCCCTTTTGGCCGTGGCGCGACGACAGTTTGTCGCCCACCTCGGGCTGGCGCAT 1600752 ||| |||||| ||||||||||| ||||| | |||||||| | ||| || ||||| | Sbjct 1500058 CAC---GCCCTTCTGGCCGTGGCGGGACGAGAACTTGTCGCCGAGCTCTGGGCGGCGCGT 1500114 Query 1600753 GGCCCGCGTGACGATCTTGA 1600772 ||||| | |||||||| Sbjct 1500115 CTGGCGCGTCAGGATCTTGA 1500134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177808113541184