Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichosporon_20inkin_20[genbank_20GCA_5F001752625.1_202016-06-24] 18 sequences; 20,339,538 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq6 116 3e-21 seq4 114 1e-20 seq3 114 1e-20 >seq6 Length=2071177 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| || | || || ||||||||||| Sbjct 2048366 GTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTCCGTCCGTCCTCGAGCTG 2048307 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || ||| ||||||| |||||||| |||||||| || ||||||||||| || || Sbjct 2048306 CTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGAATCCCCTCCTTGTCCTGGATCTT 2048247 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | || | ||||||| ||||||||| | ||| | || |||||||| Sbjct 2048246 CGACTTGACGTTGTCAATAGTGTCCGAAGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 2048187 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 |||||| || || || |||||||| Sbjct 2048186 CAGAGTCTTGACGAAGATCTGCAT 2048163 Score = 98.7 bits (108), Expect = 9e-16 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 118575 GTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATG 118634 ||||| |||||| ||||| || || ||| ||||||| |||||||| ||||| || || Sbjct 2048049 GTGCGACCATCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGAATT 2047990 Query 118635 CCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCG 118694 ||||||||||| ||| || ||||| | |||| |||||| | |||||||||| Sbjct 2047989 CCCTCCTTGTCCTGAATCTTCGACTTAACATTGTCGATGGTGTCAGATGACTCGACCTCG 2047930 Query 118695 ACGGTCACCGTTTTGCCGGTCAGAGTTTT 118723 | ||| | || |||||||| || || || Sbjct 2047929 AGGGTGATGGTCTTGCCGGTGAGGGTCTT 2047901 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA--TCCTCGAGCTGTTTTC 118599 || ||||| || || |||||||| || | | || | |||| ||||||||||| |||| Sbjct 2048587 GTCGACTCCTTCTGGATGTTGTAGTC--TGAGAGCGTGCGTCCGTCCTCGAGCTGCTTTC 2048530 Query 118600 CAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTT 118659 |||| |||| || |||||||| ||||| || |||||||||||||| || || | Sbjct 2048529 CAGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGCTCT 2048470 Query 118660 TAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAG 118719 | || | |||| ||||| | ||| ||||| | || | ||| || || || || | Sbjct 2048469 TCACATTGTCGATCGTGTCGGACGACTCAACCTCCAGAGTGATCGTCTTCCCCGTGAGGG 2048410 Query 118720 TTTTTACAAAAATCTGCAT 118738 | || || || |||||||| Sbjct 2048409 TCTTCACGAAGATCTGCAT 2048391 >seq4 Length=2739924 Score = 114 bits (126), Expect = 1e-20 Identities = 135/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| ||| | ||||| ||||||||||| Sbjct 1418358 GTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTG 1418417 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || ||| |||||||||||||||| ||||| || |||||||||||||| || || Sbjct 1418418 CTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 1418477 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| |||||||| | ||||||||||| || | || || ||||| Sbjct 1418478 CGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGAGTGATGGTCTTACCGGT 1418537 Query 118715 CAG 118717 || Sbjct 1418538 GAG 1418540 >seq3 Length=2964310 Score = 114 bits (126), Expect = 1e-20 Identities = 135/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| || | ||||| ||||||||||| Sbjct 1685817 GTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTG 1685758 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || ||| |||||||||||||||| |||||||| |||||||||||||| || || Sbjct 1685757 CTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTT 1685698 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| ||||||| | ||||||||| | ||| | || ||||| || Sbjct 1685697 GGACTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGT 1685638 Query 118715 CAG 118717 ||| Sbjct 1685637 CAG 1685635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830304828456