Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichosporon_20inkin_20[genbank_20GCA_5F001752625.1_202016-06-24] 18 sequences; 20,339,538 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq2 221 3e-52 seq5 114 3e-20 >seq2 Length=2999908 Score = 221 bits (244), Expect = 3e-52 Identities = 670/1014 (66%), Gaps = 36/1014 (4%) Strand=Plus/Plus Query 248733 GATGGTCGCCGATGACGTCCACACCGTCAT-TC--AGGACAACGCGCACCTCCTGGACGG 248789 ||||||| |||| || ||| ||| | || | || || |||| | | |||| |||| Sbjct 497287 GATGGTCTCCGAGGAAGTCTACAACATCGTCTCCAAGAACAAGGAGGCCCTC---GACGC 497343 Query 248790 CGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAA 248849 || || ||| | | || || | ||| | | ||| | |||||| || || ||| Sbjct 497344 TGCCATCATCTATGACCGCGACTTCGCCTACAACTACTTCGGTTTCAAGACCCTCGAGCG 497403 Query 248850 ATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCG 248909 || || |||||| || || |||||||||| || || ||||||||| ||||||| Sbjct 497404 CTCCTACCTCCTCCGCATCGACGGCAAGATCGCCGAGCGCCCCCAGCACATGCTGATGCG 497463 Query 248910 AGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAAT 248969 || | ||||| |||||| || |||| |||| || |||||||||||| | || Sbjct 497464 TGTTTCCGTCGGTATTCACGGCGACAACATCGAGAAGGTCATCGAGACGTACAACCTCAT 497523 Query 248970 GAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTAC-CGTCAACA 249028 | || || | | || || ||| ||||||||||||||||| | || || | || || Sbjct 497524 GTCGGAGCGTTACTTCACGCACGCCTCACCGACGCTCTTCAACTCGGGCACTCCTC-ACG 497582 Query 249029 ATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATG 249088 ||| || || ||||| || | |||||| | || ||||| ||||||| || || | Sbjct 497583 CCCAGATGTCGTCTTGCTTCCTCGTCGCCATGAAGGAGGACTCCATCGACGGTATCTACG 497642 Query 249089 ACACGCTTAA-ACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTC 249147 |||| || || || | ||| |||| || || || || || ||||||||| | || Sbjct 497643 ACACCCTCAAGACCTGC-GCGCAGATCTCCAAGACGGCCGGTGGCATCGGTCTCCACATC 497701 Query 249148 TCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATC 249207 ||||||||| || ||||| |||||||| || || || || | | |||||| Sbjct 497702 CACAACATCCGCGCCAAGGGCTCGTACATTGCTGGCACCAACGGCTACTCGAACGGTATC 497761 Query 249208 GTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGG------G 249261 || || | || || || || | || || | | | || |||||| || | Sbjct 497762 GTTCCTATGCTCCGTGCCTACGACGCTACTGCTCGTTACGTCGACCAGGGTGGCAACAAG 497821 Query 249262 CGCCGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTC 249321 |||| || | |||||||| || | || ||||| ||||| || || || ||| Sbjct 497822 CGCC---CTGGTGCCTTCGCCATCTACCTTGAGCCCTGGCATGCCGACATCTTCGACTTC 497878 Query 249322 CTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGC 249381 || ||| | |||||| |||| || ||| | | || |||||||||||||||| Sbjct 497879 CTCGACCTCCGCAAGAACCACGGAAAGGAGGAGGTTCGTGCCCGTGACCTCTTCTACGCT 497938 Query 249382 CTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTT 249441 || ||| |||||||| | |||||| || ||| || | ||||| || ||||| || | Sbjct 497939 CTCTGGATCTCCGACCTCTTCATGAAGCGTGTCGAGTCTGACGGTGACTGGACCCTCATG 497998 Query 249442 TCTCCGTCCGA-CGCCCCGGACCTCATCGATCTACACGGCGCCGACTTCGACCAAGC-CT 249499 | || | || ||||||| |||| || | ||| || || ||||| |||| | Sbjct 497999 TGCCCCGCTGAGTGCCCCGG-CCTCTCGGACGTTCACTCCGAGGAGTTCGA-GAAGCTGT 498056 Query 249500 ATAAGAAATACGAATCCAACGGCATCG---GCAAGACAATCAAGGCTCGGACCCT---TT 249553 | ||| ||||| ||||| | ||||||| |||||||| | || || | Sbjct 498057 ACGAGAGCTACGAGCGTGCCGGCAAGGGTCGCAAGACCATCAAGGCCCAGAAGCTGTGGT 498116 Query 249554 TTGCGAAGGTGGTGGAGTCCCAGATAGAGACAGGGGGGCCGTATTAT-TTGTTCAAAGAC 249612 | || | | | || |||||| ||||| || || || | | || | | ||| ||| Sbjct 498117 TCGCCA---TCCTCGAAGCCCAGACCGAGACCGGTGGCCCCT-TCATGCTCTACAAGGAC 498172 Query 249613 GCGTGC-AACGCCAAGAGTAACCAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTG 249671 || ||| ||| |||| ||||| | ||| || || |||||| ||||| || ||||| Sbjct 498173 GC-TGCAAACCGCAAGTCGAACCAGCAGCACCTCGGCACCATCAAGTCGTCCAACCTCTG 498231 Query 249672 TGCAGAGGTGATTCAATACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGC 249725 | ||| | ||| | ||||| || || ||| | |||||||||||||| || Sbjct 498232 CACTGAGATCATTGAGTACTCTTCGCCTGACGAGGTCGCCGTCTGCAACCTTGC 498285 >seq5 Length=2706222 Score = 114 bits (126), Expect = 3e-20 Identities = 241/356 (68%), Gaps = 30/356 (8%) Strand=Plus/Minus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 ||||| || |||| ||| |||| || || || ||||||||||||||||| ||||| ||| Sbjct 2617077 CTTCCGCACATGCTCTTCTACGGCCCCCCTGGCACAGGCAAGACGTCAACGATCCTCGCG 2617018 Query 254061 CTGGCCCGAACCCTGTT-GGGCGAGGGGAAC--ATGAGAGAGCGCGTGCTCGAGCTGAAC 254117 ||||| || || || |||| ||| | | | ||| ||||||||||||||| Sbjct 2617017 CTGGCGCGGCAGCTCTTCGGGC---CGGATCTGTTCAAGTCGCGTGTGCTCGAGCTGAAC 2616961 Query 254118 GCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTC---CAAG 254174 || || ||||| || || | ||||| ||||| ||||||||||| ||| | | || Sbjct 2616960 GCGTCGGACGAGCGTGGCATCTCGGTCGTACGCGAGAAGATCAAGACGTTCGCGCGCGAG 2616901 Query 254175 ATGTCG-------ATTTCGTCGT-TCCAAC-CCGGC------------TGTCCGCCTTTC 254213 | | || | || ||| ||| | |||| || ||||| | | Sbjct 2616900 ACGCCGCGCCACAACCCCGGCGTCGCCAGCGACGGCGTGTCGTACCCGTGCCCGCCGTAC 2616841 Query 254214 AAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGC 254273 || ||| | ||||| || ||||| ||| | |||||| ||||| ||| ||| ||| | Sbjct 2616840 AAACTCATCATCCTCGATGAGGCCGACTCGATGACGCAGGACGCTCAGAGCGCACTCAGG 2616781 Query 254274 CGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGT 254329 || | ||||||||| |||| | ||||| || || || ||||||||||| || Sbjct 2616780 CGCATCATGGAGACGTACTCGCGCATCACGCGGTTCTGTCTCGTGTGCAACTATGT 2616725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073766152362624